Error(s) in re-building vignettes:
  ...
--- re-building ‘a01_Introduction_to_IncidencePrevalence.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a01_Introduction_to_IncidencePrevalence_files/figure-html/unnamed-chunk-10-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 31155 bytes
Input file size = 31269 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26287
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26287

Output IDAT size = 26287 bytes (4868 bytes decrease)
Output file size = 26365 bytes (4904 bytes = 15.68% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a01_Introduction_to_IncidencePrevalence_files/figure-html/unnamed-chunk-12-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 25820 bytes
Input file size = 25934 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 21650
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 21650

Output IDAT size = 21650 bytes (4170 bytes decrease)
Output file size = 21728 bytes (4206 bytes = 16.22% decrease)

--- finished re-building ‘a01_Introduction_to_IncidencePrevalence.Rmd’

--- re-building ‘a02_Creating_denominator_populations.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a02_Creating_denominator_populations_files/figure-html/unnamed-chunk-9-1.png
672x480 pixels, 8 bits/pixel, 236 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6463 bytes
Input file size = 7261 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5226
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 5190
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 5190

Output IDAT size = 5190 bytes (1273 bytes decrease)
Output file size = 5268 bytes (1993 bytes = 27.45% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a02_Creating_denominator_populations_files/figure-html/unnamed-chunk-10-1.png
672x480 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6802 bytes
Input file size = 7657 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5541
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5541

Output IDAT size = 5541 bytes (1261 bytes decrease)
Output file size = 5619 bytes (2038 bytes = 26.62% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a02_Creating_denominator_populations_files/figure-html/unnamed-chunk-11-1.png
672x480 pixels, 8 bits/pixel, 254 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6892 bytes
Input file size = 7744 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5599
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5599

Output IDAT size = 5599 bytes (1293 bytes decrease)
Output file size = 5677 bytes (2067 bytes = 26.69% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a02_Creating_denominator_populations_files/figure-html/unnamed-chunk-13-1.png
672x480 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7218 bytes
Input file size = 8073 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5890
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5890

Output IDAT size = 5890 bytes (1328 bytes decrease)
Output file size = 5968 bytes (2105 bytes = 26.07% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a02_Creating_denominator_populations_files/figure-html/unnamed-chunk-14-1.png
672x480 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6563 bytes
Input file size = 7418 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5333
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 5333

Output IDAT size = 5333 bytes (1230 bytes decrease)
Output file size = 5411 bytes (2007 bytes = 27.06% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a02_Creating_denominator_populations_files/figure-html/unnamed-chunk-17-1.png
672x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 35692 bytes
Input file size = 35818 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 27947
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 27947

Output IDAT size = 27947 bytes (7745 bytes decrease)
Output file size = 28025 bytes (7793 bytes = 21.76% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a02_Creating_denominator_populations_files/figure-html/unnamed-chunk-18-1.png
672x768 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 47934 bytes
Input file size = 48072 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 37761
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 37761

Output IDAT size = 37761 bytes (10173 bytes decrease)
Output file size = 37839 bytes (10233 bytes = 21.29% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a02_Creating_denominator_populations_files/figure-html/unnamed-chunk-19-1.png
672x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 71868 bytes
Input file size = 72042 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 52951
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 52951

Output IDAT size = 52951 bytes (18917 bytes decrease)
Output file size = 53029 bytes (19013 bytes = 26.39% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a02_Creating_denominator_populations_files/figure-html/unnamed-chunk-20-1.png
672x960 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 38083 bytes
Input file size = 38209 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 31650
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 31650

Output IDAT size = 31650 bytes (6433 bytes decrease)
Output file size = 31728 bytes (6481 bytes = 16.96% decrease)

--- finished re-building ‘a02_Creating_denominator_populations.Rmd’

--- re-building ‘a03_Creating_target_denominator_populations.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a03_Creating_target_denominator_populations_files/figure-html/unnamed-chunk-4-1.png
288x288 pixels, 8 bits/pixel, 244 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3203 bytes
Input file size = 4025 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2769
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2769

Output IDAT size = 2769 bytes (434 bytes decrease)
Output file size = 2847 bytes (1178 bytes = 29.27% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a03_Creating_target_denominator_populations_files/figure-html/unnamed-chunk-6-1.png
288x288 pixels, 8 bits/pixel, 239 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3471 bytes
Input file size = 4278 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3027
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 3027

Output IDAT size = 3027 bytes (444 bytes decrease)
Output file size = 3105 bytes (1173 bytes = 27.42% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a03_Creating_target_denominator_populations_files/figure-html/unnamed-chunk-7-1.png
288x288 pixels, 8 bits/pixel, 246 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 3037 bytes
Input file size = 3865 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 2562
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 2555
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 2555

Output IDAT size = 2555 bytes (482 bytes decrease)
Output file size = 2633 bytes (1232 bytes = 31.88% decrease)

--- finished re-building ‘a03_Creating_target_denominator_populations.Rmd’

--- re-building ‘a04_Calculating_prevalence.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a04_Calculating_prevalence_files/figure-html/unnamed-chunk-6-1.png
672x480 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9180 bytes
Input file size = 10047 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7626
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7626

Output IDAT size = 7626 bytes (1554 bytes decrease)
Output file size = 7704 bytes (2343 bytes = 23.32% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a04_Calculating_prevalence_files/figure-html/unnamed-chunk-7-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 21563 bytes
Input file size = 22445 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20002
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 20002

Output IDAT size = 20002 bytes (1561 bytes decrease)
Output file size = 20080 bytes (2365 bytes = 10.54% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a04_Calculating_prevalence_files/figure-html/unnamed-chunk-8-1.png
672x480 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 9773 bytes
Input file size = 10640 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7812
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7812

Output IDAT size = 7812 bytes (1961 bytes decrease)
Output file size = 7890 bytes (2750 bytes = 25.85% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a04_Calculating_prevalence_files/figure-html/unnamed-chunk-9-1.png
672x480 pixels, 8 bits/pixel, 253 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8600 bytes
Input file size = 9461 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7051
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7051

Output IDAT size = 7051 bytes (1549 bytes decrease)
Output file size = 7129 bytes (2332 bytes = 24.65% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a04_Calculating_prevalence_files/figure-html/unnamed-chunk-10-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 21112 bytes
Input file size = 21994 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19579
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19579

Output IDAT size = 19579 bytes (1533 bytes decrease)
Output file size = 19657 bytes (2337 bytes = 10.63% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a04_Calculating_prevalence_files/figure-html/unnamed-chunk-11-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 21112 bytes
Input file size = 21994 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19579
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 19579

Output IDAT size = 19579 bytes (1533 bytes decrease)
Output file size = 19657 bytes (2337 bytes = 10.63% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a04_Calculating_prevalence_files/figure-html/unnamed-chunk-12-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 15267 bytes
Input file size = 16137 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13390
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13390

Output IDAT size = 13390 bytes (1877 bytes decrease)
Output file size = 13468 bytes (2669 bytes = 16.54% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a04_Calculating_prevalence_files/figure-html/unnamed-chunk-13-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 15894 bytes
Input file size = 16764 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14157
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 14157

Output IDAT size = 14157 bytes (1737 bytes decrease)
Output file size = 14235 bytes (2529 bytes = 15.09% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a04_Calculating_prevalence_files/figure-html/unnamed-chunk-14-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 28455 bytes
Input file size = 29349 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26399
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 26399

Output IDAT size = 26399 bytes (2056 bytes decrease)
Output file size = 26477 bytes (2872 bytes = 9.79% decrease)

--- finished re-building ‘a04_Calculating_prevalence.Rmd’

--- re-building ‘a05_Calculating_incidence.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a05_Calculating_incidence_files/figure-html/unnamed-chunk-7-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8760 bytes
Input file size = 9630 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7247
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7247

Output IDAT size = 7247 bytes (1513 bytes decrease)
Output file size = 7325 bytes (2305 bytes = 23.94% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a05_Calculating_incidence_files/figure-html/unnamed-chunk-8-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8731 bytes
Input file size = 9601 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7238
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7238

Output IDAT size = 7238 bytes (1493 bytes decrease)
Output file size = 7316 bytes (2285 bytes = 23.80% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a05_Calculating_incidence_files/figure-html/unnamed-chunk-9-1.png
672x480 pixels, 8 bits/pixel, 254 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8764 bytes
Input file size = 9628 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7250
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7250

Output IDAT size = 7250 bytes (1514 bytes decrease)
Output file size = 7328 bytes (2300 bytes = 23.89% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a05_Calculating_incidence_files/figure-html/unnamed-chunk-10-1.png
672x480 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8565 bytes
Input file size = 9432 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7096
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7096

Output IDAT size = 7096 bytes (1469 bytes decrease)
Output file size = 7174 bytes (2258 bytes = 23.94% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a05_Calculating_incidence_files/figure-html/unnamed-chunk-11-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 15082 bytes
Input file size = 15952 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13092
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13092

Output IDAT size = 13092 bytes (1990 bytes decrease)
Output file size = 13170 bytes (2782 bytes = 17.44% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a05_Calculating_incidence_files/figure-html/unnamed-chunk-12-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 15219 bytes
Input file size = 16089 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13313
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 13313

Output IDAT size = 13313 bytes (1906 bytes decrease)
Output file size = 13391 bytes (2698 bytes = 16.77% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a05_Calculating_incidence_files/figure-html/unnamed-chunk-12-2.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 27339 bytes
Input file size = 28233 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 25241
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 25241

Output IDAT size = 25241 bytes (2098 bytes decrease)
Output file size = 25319 bytes (2914 bytes = 10.32% decrease)


Quitting from lines 249-258 [unnamed-chunk-14] (a05_Calculating_incidence.Rmd)
Error: processing vignette 'a05_Calculating_incidence.Rmd' failed with diagnostics:
ℹ In argument: `min_cell_count = paste0(...)`.
Caused by error in `.data$min_cell_count`:
! Column `min_cell_count` not found in `.data`.
--- failed re-building ‘a05_Calculating_incidence.Rmd’

--- re-building ‘a06_Plotting_options.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a06_Plotting_options_files/figure-html/facetplot-1.png
672x480 pixels, 8 bits/pixel, 254 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8622 bytes
Input file size = 9486 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7145
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 7145

Output IDAT size = 7145 bytes (1477 bytes decrease)
Output file size = 7223 bytes (2263 bytes = 23.86% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a06_Plotting_options_files/figure-html/linesplot-1.png
672x480 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 11872 bytes
Input file size = 12739 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 10222
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 10222

Output IDAT size = 10222 bytes (1650 bytes decrease)
Output file size = 10300 bytes (2439 bytes = 19.15% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a06_Plotting_options_files/figure-html/noconfplot-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 10960 bytes
Input file size = 11830 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9324
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9324

Output IDAT size = 9324 bytes (1636 bytes decrease)
Output file size = 9402 bytes (2428 bytes = 20.52% decrease)

** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/IncidencePrevalence.Rcheck/vign_test/IncidencePrevalence/vignettes/a06_Plotting_options_files/figure-html/stackedplot-1.png
672x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 11257 bytes
Input file size = 12127 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9844
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 9844

Output IDAT size = 9844 bytes (1413 bytes decrease)
Output file size = 9922 bytes (2205 bytes = 18.18% decrease)

--- finished re-building ‘a06_Plotting_options.Rmd’

SUMMARY: processing the following file failed:
  ‘a05_Calculating_incidence.Rmd’

Error: Vignette re-building failed.
Execution halted