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run                  package:AMAPVox                   R Documentation

_R_u_n _A_M_A_P_V_o_x

_D_e_s_c_r_i_p_t_i_o_n:

     Run AMAPVox either in batch mode or with Graphical User Interface
     (GUI). The function embeds a version manager for installing
     locally any version available remotely. AMAPVox relies on Java 64
     bit. It has been compiled with JDK 8 64-Bit Oracle. For running
     AMAPVox in batch mode, any version of Java 64-bit >= 8 should
     work. AMAPVox GUI relies additionally on JavaFX. Refer to
     following section for installing a suitable Java/JavaFX.

     'gui' function as been kept for background compatibility. It is an
     alias of the 'run' function.

_U_s_a_g_e:

     run(
       version = "latest",
       xml,
       java = "java",
       jvm.options = "-Xms2048m",
       nt = 1,
       ntt = 1,
       stdout = ""
     )
     
     gui(version = "latest", java = "java", jvm.options = "-Xms2048m", stdout = "")
     
_A_r_g_u_m_e_n_t_s:

version, : either "latest" or a valid version number
          major.minor(.build) if 'version="latest"' the function looks
          for latest remote version. If there is no internet connection
          it runs latest local version.

     xml: path(s) to AMAPVox XML configuration files. If missing or
          'NULL' AMAPVox launches the GUI.

    java: path to the java executable. Default 'java' value assumes
          that java is correctly defined on the $PATH variable.

jvm.options: JVM (Java Virtual Machine) options. By default it
          allocates 2Go of heap memory to AMAPVox.

      nt: maximum number of threads for running tasks. 'nt=1' means
          sequential execution. 'nt=0' means as many threads as
          available.

     ntt: maximum number of threads per task. 'ntt=0' means as many
          threads as available.

  stdout: where output from both stdout/stderr should be sent. Same as
          stdout & stderr options from function 'system2()'.

_J_a_v_a _1._8 _6_4-_B_i_t _w_i_t_h _J_a_v_a_F_X:

     AMAPVox GUI relies on Java 1.8 64-Bit and JavaFX. In practice it
     requires either Java 1.8 64-Bit Oracle or Java 1.8 64-Bit
     Corretto. OpenJDK 8 will not work since JavaFX is not included.
     You may check beforehand if java is installed on your system and
     which version.

     system2("java", args = "-version")
     
     If AMAPVox::gui keeps throwing errors after you have installed
     suitable Java 1.8 64-Bit, it means that Java 1.8 may not be
     properly detected by your system. In such case you may have to
     check and set the 'JAVA_HOME' environment variable.

     Sys.getenv("JAVA_HOME")
     Sys.setenv(JAVA_HOME="path/to/java/1.8/bin")
     system2("java", args = "-version")
     
     As a last resort you may change the 'java' parameter of this
     function and set the full path to Java 1.8 binary.

     AMAPVox::run(java = "/path/to/java/1.8/bin/java")
     
_S_e_e _A_l_s_o:

     'getLocalVersions()', 'getRemoteVersions()', 'installVersion()'
     and 'removeVersion()'

_E_x_a_m_p_l_e_s:

     ## Not run:
     
     # (install and )run latest AMAPVox version with GUI
     AMAPVox::run()
     # (install and )run version 1.6.4 with GUI
     AMAPVox::run(version="1.6.4")
     # run latest AMAPVox version with XML configuration
     AMAPVox::run(xml="/path/to/cfg.xml")
     # run multiple configurations
     AMAPVox::run(xml=c("cfg1.xml", "cfg2.xml"), nt=2)
     ## End(Not run)
     

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Error: processing vignette ‘Installation.Rmd’ failed with diagnostics:
AMAPVox download page is unreachable (https://amap-dev.cirad.fr/projects/amapvox/files). Please check your internet connexion or try again later.
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SUMMARY: processing the following file failed:
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Error: Vignette re-building failed.
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