Running ‘testthat.R’ [119s/138s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(rapbase)
  > 
  > test_check("rapbase")
     inline R code fragments
  
  label: setup (with options) 
  List of 1
   $ include: logi FALSE
  
     inline R code fragments
  
  /usr/bin/pandoc +RTS -K512m -RTS howWeDealWithPersonalData.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/3aa3dd638b3bb5.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/file3aa3dd2085456c --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight 
     inline R code fragments
  
  label: unnamed-chunk-1 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-2 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-3 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-4 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
    ordinary text without R code
  
  label: unnamed-chunk-5 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/3aa3dd2562845d.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/file3aa3dd49e67f5 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/rmarkdown-str3aa3dd228f6e4f.html 
     inline R code fragments
  
  label: unnamed-chunk-1 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-2 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-3 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-4 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
    ordinary text without R code
  
  label: unnamed-chunk-5 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/3aa3dd228aa079.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/file3aa3dd64ecf08d --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/rmarkdown-str3aa3dd6b965de7.html 
     inline R code fragments
  
  label: unnamed-chunk-1 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-2 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-3 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-4 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
    ordinary text without R code
  
  label: unnamed-chunk-5 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/3aa3dd102d4b31.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/file3aa3dd5ba1f9c9 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/rmarkdown-str3aa3dd558c7405.html 
     inline R code fragments
  
  label: unnamed-chunk-1 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-2 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-3 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-4 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
    ordinary text without R code
  
  label: unnamed-chunk-5 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/3aa3dd3197aa13.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/file3aa3dd71805d5 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/rmarkdown-str3aa3dd56bb5774.html 
     inline R code fragments
  
  label: unnamed-chunk-1 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-2 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-3 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-4 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
    ordinary text without R code
  
  label: unnamed-chunk-5 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/3aa3dd5c5f8735.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/file3aa3dde20e934 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/rmarkdown-str3aa3dd32c7b387.html 
     inline R code fragments
  
  label: unnamed-chunk-1 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-2 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-3 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-4 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
    ordinary text without R code
  
  label: unnamed-chunk-5 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/3aa3dde0ebd31.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/file3aa3dd456d6fe6 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/rmarkdown-str3aa3dd19736d5d.html 
     inline R code fragments
  
  label: unnamed-chunk-1 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-2 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-3 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-4 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
    ordinary text without R code
  
  label: unnamed-chunk-5 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/3aa3dd4062fe27.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/file3aa3dd150a38fd --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/rmarkdown-str3aa3dd286dd83d.html 
     inline R code fragments
  
  label: unnamed-chunk-1 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-2 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-3 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-4 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
    ordinary text without R code
  
  label: unnamed-chunk-5 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/3aa3dd28021e5b.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/file3aa3dd3f8773a9 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/rmarkdown-str3aa3dd1ee16c66.html 
     inline R code fragments
  
  label: unnamed-chunk-1 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-2 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-3 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
     inline R code fragments
  
  label: unnamed-chunk-4 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
    ordinary text without R code
  
  label: unnamed-chunk-5 (with options) 
  List of 2
   $ echo   : logi FALSE
   $ results: chr "asis"
  
  /usr/bin/pandoc +RTS -K512m -RTS autoReportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/3aa3dd4ee7d9d0.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/file3aa3dd17dd3ebf --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/rmarkdown-str3aa3dd37381923.html 
     inline R code fragments
  
  label: dbName (with options) 
  List of 1
   $ echo: logi FALSE
  
     inline R code fragments
  
  /usr/bin/pandoc +RTS -K512m -RTS exportGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/3aa3dd69ef1ed5.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/file3aa3dd3f901f77 --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight 
     inline R code fragments
  
  label: setup (with options) 
  List of 1
   $ include: logi FALSE
  
     inline R code fragments
  
  /usr/bin/pandoc +RTS -K512m -RTS howWeDealWithPersonalData.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/3aa3dd6ecc0ca2.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/file3aa3dd7d61930b --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight 
     inline R code fragments
  
  label: dbName (with options) 
  List of 1
   $ echo: logi FALSE
  
     inline R code fragments
  
  /usr/bin/pandoc +RTS -K512m -RTS statsGuide.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/3aa3dd4c02332a.html --lua-filter /data/gannet/ripley/R/test-dev/bookdown/rmarkdown/lua/custom-environment.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/pagebreak.lua --lua-filter /data/gannet/ripley/R/test-dev/rmarkdown/rmarkdown/lua/latex-div.lua --metadata-file /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/file3aa3dd1129eccd --self-contained --wrap preserve --mathjax --section-divs --template /data/gannet/ripley/R/test-dev/rmarkdown/rmd/fragment/default.html --no-highlight --include-in-header /tmp/Rtmpl2CaZM/working_dir/Rtmp18izUH/rmarkdown-str3aa3dd59e0a9ee.html 
  [ FAIL 1 | WARN 0 | SKIP 25 | PASS 191 ]
  
  ══ Skipped tests ═══════════════════════════════════════════════════════════════
  • Possible lack of database infrastructure (23)
  • Test skipped Windblows. Please fix later! (1)
  • cran autocheck false positive on debian (1)
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-github.R:10'): key can be provided ───────────────────────────
  grepl("ssh-rsa", getGithub("keys", "areedv")) is not TRUE
  
  `actual`:   TRUE TRUE
  `expected`: TRUE     
  
  [ FAIL 1 | WARN 0 | SKIP 25 | PASS 191 ]
  Error: Test failures
  Execution halted