Found the following significant warnings:
  Rd warning: /tmp/RtmpNniRrV/R.INSTALL59e60583b7b/caret/man/caretSBF.Rd:47: file link ‘summary.Gam’ in package ‘gam’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpNniRrV/R.INSTALL59e60583b7b/caret/man/caretSBF.Rd:54: file link ‘summary.Gam’ in package ‘gam’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpNniRrV/R.INSTALL59e60583b7b/caret/man/dotplot.diff.resamples.Rd:23: file link ‘dotplot’ in package ‘lattice’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpNniRrV/R.INSTALL59e60583b7b/caret/man/dotplot.diff.resamples.Rd:66: file link ‘bwplot’ in package ‘lattice’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpNniRrV/R.INSTALL59e60583b7b/caret/man/dummyVars.Rd:83: file link ‘contr.treatment’ in package ‘stats’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpNniRrV/R.INSTALL59e60583b7b/caret/man/dummyVars.Rd:86: file link ‘contr.treatment’ in package ‘stats’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpNniRrV/R.INSTALL59e60583b7b/caret/man/dummyVars.Rd:173: file link ‘contr.treatment’ in package ‘stats’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpNniRrV/R.INSTALL59e60583b7b/caret/man/findLinearCombos.Rd:28: file link ‘trim.matrix’ in package ‘subselect’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpNniRrV/R.INSTALL59e60583b7b/caret/man/findLinearCombos.Rd:57: file link ‘trim.matrix’ in package ‘subselect’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpNniRrV/R.INSTALL59e60583b7b/caret/man/modelLookup.Rd:26: file link ‘grepl’ in package ‘base’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpNniRrV/R.INSTALL59e60583b7b/caret/man/modelLookup.Rd:78: file link ‘grepl’ in package ‘base’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpNniRrV/R.INSTALL59e60583b7b/caret/man/plotClassProbs.Rd:23: file link ‘densityplot’ in package ‘lattice’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpNniRrV/R.INSTALL59e60583b7b/caret/man/xyplot.resamples.Rd:162: file link ‘bwplot’ in package ‘lattice’ does not exist and so has been treated as a topic
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/caret.Rcheck/00install.out’ for details.