Found the following significant warnings:
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/Assay-class.Rd:9: file link ‘Assay’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/Assay-class.Rd:12: file link ‘Assay’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/ColorDimSplit.Rd:33: file link ‘brewer.pal.info’ in package ‘RColorBrewer’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/ColorDimSplit.Rd:68: file link ‘patchwork’ in package ‘patchwork’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/DimHeatmap.Rd:60: file link ‘patchwork’ in package ‘patchwork’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/DimHeatmap.Rd:67: file link ‘patchwork’ in package ‘patchwork’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/DimHeatmap.Rd:80: file link ‘geom_raster’ in package ‘ggplot2’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/DimPlot.Rd:52: file link ‘brewer.pal.info’ in package ‘RColorBrewer’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/DimPlot.Rd:106: file link ‘patchwork’ in package ‘patchwork’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/DimPlot.Rd:115: file link ‘patchwork’ in package ‘patchwork’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/DimReduc-class.Rd:10: file link ‘DimReduc’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/DimReduc-class.Rd:13: file link ‘DimReduc’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/DoHeatmap.Rd:70: file link ‘patchwork’ in package ‘patchwork’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/DoHeatmap.Rd:74: file link ‘patchwork’ in package ‘patchwork’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/FeaturePlot.Rd:110: file link ‘patchwork’ in package ‘patchwork’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/FeaturePlot.Rd:117: file link ‘patchwork’ in package ‘patchwork’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/FeatureScatter.Rd:48: file link ‘patchwork’ in package ‘patchwork’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/Graph-class.Rd:9: file link ‘Graph’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/Graph-class.Rd:12: file link ‘Graph’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/HVFInfo.SCTAssay.Rd:41: file link ‘HVFInfo’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/JackStrawData-class.Rd:9: file link ‘JackStrawData’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/JackStrawData-class.Rd:12: file link ‘JackStrawData’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/JackStrawPlot.Rd:22: file link ‘brewer.pal.info’ in package ‘RColorBrewer’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/LinkedPlots.Rd:47: file link ‘patchwork’ in package ‘patchwork’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/NNPlot.Rd:61: file link ‘patchwork’ in package ‘patchwork’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/Neighbor-class.Rd:9: file link ‘Neighbor’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/Neighbor-class.Rd:12: file link ‘Neighbor’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/RidgePlot.Rd:54: file link ‘patchwork’ in package ‘patchwork’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/RidgePlot.Rd:60: file link ‘patchwork’ in package ‘patchwork’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/SCTAssay-class.Rd:61: file link ‘levels<-’ in package ‘base’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/Seurat-class.Rd:10: file link ‘Seurat’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/Seurat-class.Rd:13: file link ‘Seurat’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/SeuratCommand-class.Rd:9: file link ‘SeuratCommand’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/SeuratCommand-class.Rd:12: file link ‘SeuratCommand’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/SpatialImage-class.Rd:9: file link ‘SpatialImage’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/SpatialImage-class.Rd:12: file link ‘SpatialImage’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/SpatialPlot.Rd:92: file link ‘brewer.pal.info’ in package ‘RColorBrewer’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/VizDimLoadings.Rd:38: file link ‘patchwork’ in package ‘patchwork’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/VizDimLoadings.Rd:42: file link ‘patchwork’ in package ‘patchwork’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/VlnPlot.Rd:68: file link ‘patchwork’ in package ‘patchwork’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/VlnPlot.Rd:76: file link ‘patchwork’ in package ‘patchwork’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpPWxmPz/R.INSTALL63d31577140e/Seurat/man/merge.SCTAssay.Rd:17: file link ‘Seurat’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/Seurat.Rcheck/00install.out’ for details.