Found the following significant warnings:
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/AlleleFreq.Rd:31: file link ‘Seurat’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/Annotation.Rd:30: file link ‘GRanges’ in package ‘GenomicRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/Annotation.Rd:35: file link ‘GRanges’ in package ‘GenomicRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/AnnotationPlot.Rd:10: file link ‘Seurat’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/BinarizeCounts.Rd:29: file link ‘Seurat’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpcfTe4d/Rbuild493673cfd89f/Signac/man/CallPeaks.Rd:131: file link ‘GRanges’ in package ‘GenomicRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/ChromatinAssay-class.Rd:9: file link ‘Assay’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/ChromatinAssay-class.Rd:15: file link ‘GRanges’ in package ‘GenomicRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/ChromatinAssay-class.Rd:22: file link ‘Seqinfo’ in package ‘GenomeInfoDb’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/ChromatinAssay-class.Rd:25: file link ‘GRanges’ in package ‘GenomicRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/ChromatinAssay-class.Rd:34: file link ‘GRanges’ in package ‘GenomicRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/ConnectionsToLinks.Rd:29: file link ‘GRanges’ in package ‘GenomicRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/CountsInRegion.Rd:16: file link ‘findOverlaps’ in package ‘IRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/CreateChromatinAssay.Rd:47: file link ‘GRanges’ in package ‘GenomicRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/CreateChromatinAssay.Rd:59: file link ‘Seqinfo’ in package ‘GenomeInfoDb’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/CreateChromatinAssay.Rd:63: file link ‘GRanges’ in package ‘GenomicRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/CreateMotifMatrix.Rd:20: file link ‘PFMatrixList’ in package ‘TFBSTools’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/CreateMotifMatrix.Rd:21: file link ‘PWMatrixList’ in package ‘TFBSTools’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/CreateMotifObject.Rd:28: file link ‘GRangesList’ in package ‘GenomicRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/DepthCor.Rd:10: file link ‘Seurat’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/DownsampleFeatures.Rd:19: file link ‘Seurat’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/Extend.Rd:21: file link ‘GRanges’ in package ‘GenomicRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/FRiP.Rd:23: file link ‘Seurat’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/FindClonotypes.Rd:36: file link ‘Seurat’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/FindTopFeatures.Rd:39: file link ‘Seurat’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/Footprint.Rd:44: file link ‘BSgenome’ in package ‘BSgenome’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/Footprint.Rd:67: file link ‘Seurat’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/GenomeBinMatrix.Rd:23: file link ‘seqlengths’ in package ‘GenomeInfoDb’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/GetGRangesFromEnsDb.Rd:25: file link ‘crunch’ in package ‘biovizBase’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/GetMotifData.Rd:28: file link ‘Seurat’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/IntersectMatrix.Rd:33: file link ‘findOverlaps’ in package ‘IRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/LinkPlot.Rd:10: file link ‘Seurat’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/Links.Rd:29: file link ‘GRanges’ in package ‘GenomicRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/Motif-class.Rd:24: file link ‘GRangesList’ in package ‘GenomicRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/NucleosomeSignal.Rd:29: file link ‘Seurat’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/PeakPlot.Rd:17: file link ‘Seurat’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/RunChromVAR.Rd:41: file link ‘Seurat’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/RunSVD.Rd:76: file link ‘Seurat’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/RtmpcfTe4d/Rbuild493673cfd89f/Signac/man/RunTFIDF.Rd:65: file link ‘Seurat’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/SetMotifData.Rd:30: file link ‘Seurat’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/TSSEnrichment.Rd:43: file link ‘Seurat’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/TSSPlot.Rd:21: file link ‘ggplot2’ in package ‘ggplot2’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/UnifyPeaks.Rd:14: file link ‘reduce’ in package ‘GenomicRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/UnifyPeaks.Rd:15: file link ‘disjoin’ in package ‘GenomicRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/as.ChromatinAssay.Rd:30: file link ‘Seqinfo’ in package ‘GenomeInfoDb’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/coverage-ChromatinAssay-method.Rd:29: file link ‘coverage’ in package ‘IRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/coverage-ChromatinAssay-method.Rd:32: file link ‘coverage’ in package ‘IRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/coverage-ChromatinAssay-method.Rd:35: file link ‘coverage’ in package ‘IRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/coverage-ChromatinAssay-method.Rd:37: file link ‘coverage’ in package ‘IRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/findOverlaps-methods.Rd:139: file link ‘findOverlaps’ in package ‘GenomicRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/findOverlaps-methods.Rd:152: file link ‘Seurat’ in package ‘SeuratObject’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/findOverlaps-methods.Rd:143: file link ‘findOverlaps’ in package ‘GenomicRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/granges-methods.Rd:28: file link ‘GRanges’ in package ‘GenomicRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/granges-methods.Rd:25: file link ‘GRanges’ in package ‘GenomicRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/granges-methods.Rd:41: file link ‘granges’ in package ‘GenomicRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/nearest-methods.Rd:105: file link ‘GRanges’ in package ‘GenomicRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/nearest-methods.Rd:117: file link ‘GRanges’ in package ‘GenomicRanges’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/seqinfo-methods.Rd:93: file link ‘Seqinfo’ in package ‘GenomeInfoDb’ does not exist and so has been treated as a topic
  Rd warning: /tmp/Rtmp4YkPMQ/R.INSTALL56c520e78e7/Signac/man/seqinfo-methods.Rd:88: file link ‘Seqinfo’ in package ‘GenomeInfoDb’ does not exist and so has been treated as a topic
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/Signac.Rcheck/00install.out’ for details.