Error(s) in re-building vignettes:
--- re-building ‘activePathways-vignette.Rmd’ using rmarkdown
background gene set of  7717  genes derived from GMT file
35 terms were removed from gmt because they did not make the geneset.filter
91 rows were removed from scores because they are not found in the background
background gene set of  7717  genes derived from GMT file
35 terms were removed from gmt because they did not make the geneset.filter
91 rows were removed from scores because they are not found in the background
background gene set of  7717  genes derived from GMT file
35 terms were removed from gmt because they did not make the geneset.filter
91 rows were removed from scores because they are not found in the background
background gene set of  7717  genes derived from GMT file
35 terms were removed from gmt because they did not make the geneset.filter
91 rows were removed from scores because they are not found in the background
background gene set of  5615  genes derived from GMT file
675 rows were removed from scores because they are not found in the background
background gene set of  5614  genes derived from user-defined list
35 terms were removed from gmt because they did not make the geneset.filter
676 rows were removed from scores because they are not found in the background
background gene set of  7717  genes derived from GMT file
35 terms were removed from gmt because they did not make the geneset.filter
91 rows were removed from scores because they are not found in the background
background gene set of  7717  genes derived from GMT file
35 terms were removed from gmt because they did not make the geneset.filter
91 rows were removed from scores because they are not found in the background
background gene set of  7717  genes derived from GMT file
35 terms were removed from gmt because they did not make the geneset.filter
91 rows were removed from scores because they are not found in the background
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'activePathways-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘activePathways-vignette.Rmd’

--- re-building ‘enrichmentMap-vignette.Rmd’ using rmarkdown
dyld: lazy symbol binding failed: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ____chkstk_darwin
  Referenced from: /usr/local/bin/pandoc (which was built for Mac OS X 10.15)
  Expected in: /usr/lib/libSystem.B.dylib

Error: processing vignette 'enrichmentMap-vignette.Rmd' failed with diagnostics:
pandoc document conversion failed with error 6
--- failed re-building ‘enrichmentMap-vignette.Rmd’

SUMMARY: processing the following files failed:
  ‘activePathways-vignette.Rmd’ ‘enrichmentMap-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted