Error(s) in re-building vignettes:
--- re-building ‘rodeoVignette.Rmd’ using rmarkdown
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/vignetteData/fortran/functionsCode.f95 -o /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/vignetteData/fortran/functionsCode.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6766fbeccf8.f95 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6766fbeccf8.o
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6766fbeccf8.f95:65:39:

   65 |   double precision, dimension(NVAR*NBOX), intent(in):: var
      |                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6766fbeccf8.f95:66:39:

   66 |   double precision, dimension(NPAR*NBOX), intent(in):: par
      |                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6766fbeccf8.f95:59:20:

   59 | subroutine drvs(time, var, par, NBOX, dydt, pro)
      |                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa676a209d2f.f95 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa676a209d2f.o
gcc -shared -L/usr/local/lib64 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6763754594b.so /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/vignetteData/fortran/functionsCode.o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6766fbeccf8.o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa676a209d2f.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
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make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa676309144ce.f95 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa676309144ce.o
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa676309144ce.f95:83:39:

   83 |   double precision, dimension(NVAR*NBOX), intent(in):: var
      |                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa676309144ce.f95:84:39:

   84 |   double precision, dimension(NPAR*NBOX), intent(in):: par
      |                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa676309144ce.f95:77:20:

   77 | subroutine drvs(time, var, par, NBOX, dydt, pro)
      |                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6762b416b7b.f95 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6762b416b7b.o
gcc -shared -L/usr/local/lib64 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa67656e1d441.so /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa676309144ce.o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6762b416b7b.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6762bc1ab53.f95 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6762bc1ab53.o
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6762bc1ab53.f95:59:39:

   59 |   double precision, dimension(NVAR*NBOX), intent(in):: var
      |                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6762bc1ab53.f95:60:39:

   60 |   double precision, dimension(NPAR*NBOX), intent(in):: par
      |                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6762bc1ab53.f95:53:20:

   53 | subroutine drvs(time, var, par, NBOX, dydt, pro)
      |                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6767348c0fa.f95 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6767348c0fa.o
gcc -shared -L/usr/local/lib64 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6762bc99d3f.so /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6762bc1ab53.o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6767348c0fa.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.f95 -o /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.o
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.f95:14:20:

   14 |   function cDn (time) result (r)
      |                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.f95:8:20:

    8 |   function cUp (time) result (r)
      |                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6765e9e9946.f95 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6765e9e9946.o
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6765e9e9946.f95:64:39:

   64 |   double precision, dimension(NVAR*NBOX), intent(in):: var
      |                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6765e9e9946.f95:65:39:

   65 |   double precision, dimension(NPAR*NBOX), intent(in):: par
      |                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa67637e4e770.f95 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa67637e4e770.o
gcc -shared -L/usr/local/lib64 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6766741d50a.so /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/advectionDispersion/functions.o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6765e9e9946.o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa67637e4e770.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
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make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.f95 -o /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.o
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.f95:23:38:

   23 |   double precision function hRiv (time)
      |                                      1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.f95:18:37:

   18 |   double precision function rch (time)
      |                                     1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa676800ccb7.f95 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa676800ccb7.o
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa676800ccb7.f95:70:39:

   70 |   double precision, dimension(NVAR*NBOX), intent(in):: var
      |                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa676800ccb7.f95:71:39:

   71 |   double precision, dimension(NPAR*NBOX), intent(in):: par
      |                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa67641ba2654.f95 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa67641ba2654.o
gcc -shared -L/usr/local/lib64 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6761683f6ce.so /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/groundwater/functions.o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa676800ccb7.o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa67641ba2654.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
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gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/tetracycline/functions.f95 -o /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/tetracycline/functions.o
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6766d6b452a.f95 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6766d6b452a.o
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6766d6b452a.f95:165:39:

  165 |   double precision, dimension(NVAR*NBOX), intent(in):: var
      |                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6766d6b452a.f95:166:39:

  166 |   double precision, dimension(NPAR*NBOX), intent(in):: par
      |                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6766d6b452a.f95:159:20:

  159 | subroutine drvs(time, var, par, NBOX, dydt, pro)
      |                    1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa676662a25c0.f95 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa676662a25c0.o
gcc -shared -L/usr/local/lib64 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa676631af845.so /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/1D/tetracycline/functions.o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6766d6b452a.o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa676662a25c0.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
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make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
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gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95 -o /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.o
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:18:18:

   18 | function sInf(time) result (res)
      |                  1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:12:18:

   12 | function xInf(time) result (res)
      |                  1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:6:15:

    6 | function q(time) result (res)
      |               1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6767881e38.f95 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6767881e38.o
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6767881e38.f95:80:39:

   80 |   double precision, dimension(NVAR*NBOX), intent(in):: var
      |                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6767881e38.f95:81:39:

   81 |   double precision, dimension(NPAR*NBOX), intent(in):: par
      |                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6762f4c669b.f95 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6762f4c669b.o
gcc -shared -L/usr/local/lib64 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa676650f4bbe.so /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6767881e38.o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rodeoa6762f4c669b.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
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gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea6761ae0a3c0.f95 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea6761ae0a3c0.o
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea6761ae0a3c0.f95:269:11:

  269 | integer:: i
      |           1
Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable]
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea6761ae0a3c0.f95:301:0:

  301 |   if (abs(hnext) .lt. hmin) then
      | 
Warning: ‘hnext’ may be used uninitialized in this function [-Wmaybe-uninitialized]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95 -o /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.o
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:18:18:

   18 | function sInf(time) result (res)
      |                  1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:12:18:

   12 | function xInf(time) result (res)
      |                  1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:6:15:

    6 | function q(time) result (res)
      |               1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea67667882fe3.f95 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea67667882fe3.o
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea67667882fe3.f95:67:39:

   67 |   double precision, dimension(NVAR*NBOX), intent(in):: var
      |                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea67667882fe3.f95:68:39:

   68 |   double precision, dimension(NPAR*NBOX), intent(in):: par
      |                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea6766a46a439.f95 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea6766a46a439.o
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea6766a46a439.f95:18:43:

   18 |       double precision, dimension(NVAR*NBOX), intent(in):: var
      |                                           1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea6766a46a439.f95:19:43:

   19 |       double precision, dimension(NPAR*NBOX), intent(in):: par
      |                                           1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea6766a46a439.f95:30:46:

   30 |   subroutine derivs_wrapped(t,u,par,dudt,error)
      |                                              1
Warning: Dummy argument ‘error’ at (1) was declared INTENT(OUT) but was not set [-Wunused-dummy-argument]
gcc -shared -L/usr/local/lib64 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rk5a6767dfb9c05.so /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea6761ae0a3c0.o /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea67667882fe3.o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea6766a46a439.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea676e5b0d85.f95 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea676e5b0d85.o
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea676e5b0d85.f95:269:11:

  269 | integer:: i
      |           1
Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable]
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea676e5b0d85.f95:301:0:

  301 |   if (abs(hnext) .lt. hmin) then
      | 
Warning: ‘hnext’ may be used uninitialized in this function [-Wmaybe-uninitialized]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95 -o /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.o
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:18:18:

   18 | function sInf(time) result (res)
      |                  1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:12:18:

   12 | function xInf(time) result (res)
      |                  1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
/data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.f95:6:15:

    6 | function q(time) result (res)
      |               1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea67675385df3.f95 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea67675385df3.o
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea67675385df3.f95:70:39:

   70 |   double precision, dimension(NVAR*NBOX), intent(in):: var
      |                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea67675385df3.f95:71:39:

   71 |   double precision, dimension(NPAR*NBOX), intent(in):: par
      |                                       1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea67675385df3.f95:64:22:

   64 | subroutine derivs(time, var, par, NBOX, dydt, pro)
      |                      1
Warning: Unused dummy argument ‘time’ at (1) [-Wunused-dummy-argument]
gfortran -fno-optimize-sibling-calls  -fpic  -g -O2 -mtune=native -Wall -pedantic  -c  /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea6763fb52d91.f95 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea6763fb52d91.o
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea6763fb52d91.f95:18:43:

   18 |       double precision, dimension(NVAR*NBOX), intent(in):: var
      |                                           1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea6763fb52d91.f95:19:43:

   19 |       double precision, dimension(NPAR*NBOX), intent(in):: par
      |                                           1
Warning: GNU Extension: Symbol ‘nbox’ is used before it is typed at (1)
/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea6763fb52d91.f95:30:46:

   30 |   subroutine derivs_wrapped(t,u,par,dudt,error)
      |                                              1
Warning: Dummy argument ‘error’ at (1) was declared INTENT(OUT) but was not set [-Wunused-dummy-argument]
gcc -shared -L/usr/local/lib64 -o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/rk5a6766d12d298.so /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea676e5b0d85.o /data/gannet/ripley/R/packages/tests-devel/rodeo.Rcheck/vign_test/rodeo/vignettes/examples/linked/waterSediment/functions.o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea67675385df3.o /tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM/filea6763fb52d91.o -lgfortran -lm -lquadmath
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Entering directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
make[1]: Leaving directory '/tmp/RtmpHC7EPc/working_dir/Rtmp1bYOhM'
! LaTeX Error: Environment cslreferences undefined.

Error: processing vignette 'rodeoVignette.Rmd' failed with diagnostics:
Failed to compile rodeoVignette.tex. See https://yihui.name/tinytex/r/#debugging for debugging tips. See rodeoVignette.log for more info.
--- failed re-building ‘rodeoVignette.Rmd’

SUMMARY: processing the following file failed:
  ‘rodeoVignette.Rmd’

Error: Vignette re-building failed.
Execution halted