Running 'testthat.R' [19s/21s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(markovchain)
  Package:  markovchain
  Version:  0.8.0
  Date:     2019-09-13
  BugReport: http://github.com/spedygiorgio/markovchain/issues
  
  > test_check("markovchain")
   ----------- FAILURE REPORT -------------- 
   --- failure: the condition has length > 1 ---
   --- srcref --- 
  : 
   --- package (from environment) --- 
  markovchain
   --- call from context --- 
  markovchainListFit(data = myHolson)
   --- call from argument --- 
  if (class(data) == "list") {
      markovchains <- list()
      freqMatrixes <- .mcListFitForList(data)
  } else {
      if (is.data.frame(data)) {
          data <- unname(as.matrix(data))
      }
      if (!byrow) {
          data <- t(data)
      }
      nCols <- ncol(data)
      freqMatrixes <- lapply(seq_len(nCols - 1), function(i) {
          matrData <- data[, c(i, i + 1)]
          matrData[1, ] <- as.character(matrData[1, ])
          validTransition <- any(apply(matrData, 1, function(x) {
              !any(is.na(x))
          }))
          if (validTransition) 
              createSequenceMatrix(matrData, toRowProbs = FALSE, 
                  sanitize = TRUE)
      })
      freqMatrixes <- freqMatrixes[!sapply(freqMatrixes, is.null)]
  }
   --- R stacktrace ---
  where 1: markovchainListFit(data = myHolson)
  where 2: eval_bare(expr, quo_get_env(quo))
  where 3: quasi_label(enquo(object), label, arg = "object")
  where 4 at testthat/testFits.R#19: expect_equal(markovchainListFit(data = myHolson), checkmarkovchainFitList)
  where 5: eval(code, test_env)
  where 6: eval(code, test_env)
  where 7: withCallingHandlers({
      eval(code, test_env)
      if (!handled && !is.null(test)) {
          skip_empty()
      }
  }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, 
      message = handle_message, error = handle_error)
  where 8: doTryCatch(return(expr), name, parentenv, handler)
  where 9: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  where 10: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
  where 11: doTryCatch(return(expr), name, parentenv, handler)
  where 12: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), 
      names[nh], parentenv, handlers[[nh]])
  where 13: tryCatchList(expr, classes, parentenv, handlers)
  where 14: tryCatch(withCallingHandlers({
      eval(code, test_env)
      if (!handled && !is.null(test)) {
          skip_empty()
      }
  }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, 
      message = handle_message, error = handle_error), error = handle_fatal, 
      skip = function(e) {
      })
  where 15: test_code(desc, code, env = parent.frame())
  where 16 at testthat/testFits.R#17: test_that("Check markovchainFit & listFit", {
      expect_equal(markovchainFit(ciao), simpleMcCiaoFit)
      expect_equal(markovchainListFit(data = myHolson), checkmarkovchainFitList)
  })
  where 17: eval(code, test_env)
  where 18: eval(code, test_env)
  where 19: withCallingHandlers({
      eval(code, test_env)
      if (!handled && !is.null(test)) {
          skip_empty()
      }
  }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, 
      message = handle_message, error = handle_error)
  where 20: doTryCatch(return(expr), name, parentenv, handler)
  where 21: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  where 22: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
  where 23: doTryCatch(return(expr), name, parentenv, handler)
  where 24: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]), 
      names[nh], parentenv, handlers[[nh]])
  where 25: tryCatchList(expr, classes, parentenv, handlers)
  where 26: tryCatch(withCallingHandlers({
      eval(code, test_env)
      if (!handled && !is.null(test)) {
          skip_empty()
      }
  }, expectation = handle_expectation, skip = handle_skip, warning = handle_warning, 
      message = handle_message, error = handle_error), error = handle_fatal, 
      skip = function(e) {
      })
  where 27: test_code(NULL, exprs, env)
  where 28: source_file(path, new.env(parent = env), chdir = TRUE, wrap = wrap)
  where 29: force(code)
  where 30: doWithOneRestart(return(expr), restart)
  where 31: withOneRestart(expr, restarts[[1L]])
  where 32: withRestarts(testthat_abort_reporter = function() NULL, force(code))
  where 33: with_reporter(reporter = reporter, start_end_reporter = start_end_reporter, 
      {
          reporter$start_file(basename(path))
          lister$start_file(basename(path))
          source_file(path, new.env(parent = env), chdir = TRUE, 
              wrap = wrap)
          reporter$.end_context()
          reporter$end_file()
      })
  where 34: FUN(X[[i]], ...)
  where 35: lapply(paths, test_file, env = env, reporter = current_reporter, 
      start_end_reporter = FALSE, load_helpers = FALSE, wrap = wrap)
  where 36: force(code)
  where 37: doWithOneRestart(return(expr), restart)
  where 38: withOneRestart(expr, restarts[[1L]])
  where 39: withRestarts(testthat_abort_reporter = function() NULL, force(code))
  where 40: with_reporter(reporter = current_reporter, results <- lapply(paths, 
      test_file, env = env, reporter = current_reporter, start_end_reporter = FALSE, 
      load_helpers = FALSE, wrap = wrap))
  where 41: test_files(paths, reporter = reporter, env = env, stop_on_failure = stop_on_failure, 
      stop_on_warning = stop_on_warning, wrap = wrap)
  where 42: test_dir(path = test_path, reporter = reporter, env = env, filter = filter, 
      ..., stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, 
      wrap = wrap)
  where 43: test_package_dir(package = package, test_path = test_path, filter = filter, 
      reporter = reporter, ..., stop_on_failure = stop_on_failure, 
      stop_on_warning = stop_on_warning, wrap = wrap)
  where 44: test_check("markovchain")
  
   --- value of length: 2 type: logical ---
  [1] FALSE FALSE
   --- function from context --- 
  function (data, byrow = TRUE, laplacian = 0, name) 
  {
      if (!any((class(data) %in% c("data.frame", "matrix", "list")))) {
          stop("Error: data must be either a matrix or a data.frame or a list")
      }
      freqMatrixes <- list()
      if (class(data) == "list") {
          markovchains <- list()
          freqMatrixes <- .mcListFitForList(data)
      }
      else {
          if (is.data.frame(data)) {
              data <- unname(as.matrix(data))
          }
          if (!byrow) {
              data <- t(data)
          }
          nCols <- ncol(data)
          freqMatrixes <- lapply(seq_len(nCols - 1), function(i) {
              matrData <- data[, c(i, i + 1)]
              matrData[1, ] <- as.character(matrData[1, ])
              validTransition <- any(apply(matrData, 1, function(x) {
                  !any(is.na(x))
              }))
              if (validTransition) 
                  createSequenceMatrix(matrData, toRowProbs = FALSE, 
                    sanitize = TRUE)
          })
          freqMatrixes <- freqMatrixes[!sapply(freqMatrixes, is.null)]
      }
      if (length(freqMatrixes) == 0) {
          return(list())
      }
      markovchains <- lapply(freqMatrixes, function(freqMatrix) {
          freqMatrix <- freqMatrix + laplacian
          rSums <- rowSums(freqMatrix)
          tMatrix <- freqMatrix/rSums
          estMc <- new("markovchain", transitionMatrix = tMatrix)
          estMc
      })
      outMcList <- new("markovchainList", markovchains = markovchains)
      out <- list(estimate = outMcList)
      if (!missing(name)) {
          out$estimate@name <- name
      }
      return(out)
  }
  <bytecode: 0xa350a30>
  <environment: namespace:markovchain>
   --- function search by body ---
  Function markovchainListFit in namespace markovchain has this body.
   ----------- END OF FAILURE REPORT -------------- 
  Fatal error: the condition has length > 1