Running 'test-all.R' [20s]
Running the tests in 'tests/test-all.R' failed.
Complete output:
  > library(testthat)
  > test_check("treeman")
  Loading required package: treeman
  [4] in treelst is not a TreeMan object
  These nodes are invalid:
  n5, t3, t10
   
  These nodes are invalid:
  t7
   
  Root node `x` not in ndlst
   
  These nodes are invalid:
  n2
   
  These nodes are invalid:
  n2, n5
   
  Formal class 'TreeMan' [package "treeman"] with 17 slots
    ..@ ndlst       :List of 19
    ..@ nds         : chr [1:9] "n1" "n2" "n3" "n4" ...
    ..@ nnds        : int 9
    ..@ tips        : chr [1:10] "t1" "t10" "t2" "t3" ...
    ..@ ntips       : int 10
    ..@ all         : chr [1:19] "n1" "n2" "n3" "n4" ...
    ..@ nall        : int 19
    ..@ pd          : num 10.4
    ..@ wspn        : logi TRUE
    ..@ wtxnyms     : logi FALSE
    ..@ ply         : logi FALSE
    ..@ updtd       : logi TRUE
    ..@ ndmtrx      :Formal class 'big.matrix' [package "bigmemory"] with 1 slot
    ..@ tinds       : int [1:10] 10 11 12 13 14 15 16 17 18 19
    ..@ prinds      : num [1:19] 1 1 2 3 2 5 4 5 8 9 ...
    ..@ root        : chr "n1"
    ..@ othr_slt_nms: logi(0) 
  [1] "TreeMan Object of [10] tips"
  Tree (TreeMan Object):
    + 10 tips
    + 9 internal nodes
    + With node matrix
    + Binary
    + PD 10.2
    + Root node is "n1"
  Node (internal node):
    + ID: "n7"
    + prid: "n2"
    + ptid: "t4", "t10"
    + nkids: 2
    + spn: 0.33
    + predist: 1.1
    + pd: 0.5
  Tree (TreeMan Object):
    + 10 tips
    + 9 internal nodes
    + With node matrix
    + Binary
    + PD 9.06
    + Root node is "n1"
    + With additional node slots:
      [binary_val]
  Tree (TreeMan Object):
    + 10 tips
    + 9 internal nodes
    + With node matrix
    + Binary
    + PD 9.5
    + Root node is "n1"
  [1] "TreeMen Object of [3] trees"
  TreeMen Object of [3] trees-- 1. Error: taxaResolve([basic]) works (@test_server_methods.R#52)  -----------
  ICU init failed: U_FILE_ACCESS_ERROR
  1: taxaResolve(test_names) at testthat/test_server_methods.R:52
  2: batchResolve(btrms[[i]])
  3: paste0("names=", paste0(stringr::str_replace_all(batch.nms, " ", "+"), collapse = "|"))
  4: paste0(stringr::str_replace_all(batch.nms, " ", "+"), collapse = "|")
  5: stringr::str_replace_all
  6: getExportedValue(pkg, name)
  7: asNamespace(ns)
  8: getNamespace(ns)
  9: tryCatch(loadNamespace(name), error = function(e) stop(e))
  10: tryCatchList(expr, classes, parentenv, handlers)
  11: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  12: value[[3L]](cond)
  
  -- 2. Error: searchTxnyms([basic]) works (@test_server_methods.R#62)  ----------
  ICU init failed: U_FILE_ACCESS_ERROR
  1: searchTxnyms(tree, cache = TRUE) at testthat/test_server_methods.R:62
  2: taxaResolve(tip_labels, datasource = 4, cache = cache, parent = parent)
  3: batchResolve(btrms[[i]])
  4: paste0("names=", paste0(stringr::str_replace_all(batch.nms, " ", "+"), collapse = "|"))
  5: paste0(stringr::str_replace_all(batch.nms, " ", "+"), collapse = "|")
  6: stringr::str_replace_all
  7: getExportedValue(pkg, name)
  8: asNamespace(ns)
  9: getNamespace(ns)
  10: tryCatch(loadNamespace(name), error = function(e) stop(e))
  11: tryCatchList(expr, classes, parentenv, handlers)
  12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
  13: value[[3L]](cond)
  
  == testthat results  ===========================================================
  OK: 241 SKIPPED: 7 FAILED: 2
  1. Error: taxaResolve([basic]) works (@test_server_methods.R#52) 
  2. Error: searchTxnyms([basic]) works (@test_server_methods.R#62) 
  
  Error: testthat unit tests failed
  Execution halted