Running ‘testthat.R’ [11s/306s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(BioInstaller)
  > 
  > 
  > test_check("BioInstaller")
  cloning into '/tmp/RtmpqJVlP5/github_demo0'...
  Receiving objects:  16% (1/6),    0 kb
  Receiving objects:  33% (2/6),    0 kb
  Receiving objects:  50% (3/6),    0 kb
  Receiving objects:  66% (4/6),    0 kb
  Receiving objects:  83% (5/6),    0 kb
  Receiving objects: 100% (6/6),    0 kb, done.
  cloning into '/tmp/RtmpqJVlP5/github_demo2'...
  Receiving objects:  16% (1/6),    0 kb
  Receiving objects:  33% (2/6),    0 kb
  Receiving objects:  50% (3/6),    0 kb
  Receiving objects:  66% (4/6),    0 kb
  Receiving objects:  83% (5/6),    0 kb
  Receiving objects: 100% (6/6),    0 kb, done.
  trying URL 'https://raw.githubusercontent.com/Miachol/ftp/master/files/GRCh37_MT_ensGene.txt'
  Content type 'text/plain; charset=utf-8' length 3131 bytes
  ==================================================
  downloaded 3131 bytes
  
  trying URL 'https://raw.githubusercontent.com/Miachol/ftp/master/files/GRCh37_MT_ensGene.txt'
  Content type 'text/plain; charset=utf-8' length 3131 bytes
  ==================================================
  downloaded 3131 bytes
  
  trying URL 'https://raw.githubusercontent.com/Miachol/ftp/master/files/GRCh37_MT_ensGene.txt'
  Content type 'text/plain; charset=utf-8' length 3131 bytes
  ==================================================
  downloaded 3131 bytes
  
  cloning into '/tmp/RtmpqJVlP5/github_demo3'...
  ── 1. Error: install.bioinfo (@test_install.R#57)  ─────────────────────────────
  SSL error: error:140E0197:SSL routines:SSL_shutdown:shutdown while in init
  1: install.bioinfo(name = "github_demo", destdir = destdir, download.dir = destdir, 
         verbose = F) at testthat/test_install.R:57
  2: install.github(name = i, destdir = destdir[count], download.dir = download.dir[count], 
         github.cfg = github.cfg, name.saved = name.saved[count], version = version[count], 
         local.source = local.source[count], show.all.versions = show.all.versions, db = db, 
         download.only = download.only, verbose = verbose, showWarnings = showWarnings, 
         dependence.need = dependence.need, extra.list = extra.list, rmcd.parse = rcmd.parse, 
         bash.parse = bash.parse, glue.parse = glue.parse, glue.flag = glue.flag, save.to.db = save.to.db, 
         ...)
  3: git.download(name, download.dir, version, github_url, use_git2r, recursive_clone, 
         verbose)
  4: git2r::clone(github_url, destdir)
  
  cloning into '/tmp/RtmpqJVlP5/github_demo'...
  ── 2. Error: dependence (@test_install_uilts.R#88)  ────────────────────────────
  SSL error: unknown error
  1: install.dependence("github_demo", "master", destdir, destdir, F) at testthat/test_install_uilts.R:88
  2: install.bioinfo(name = need.install, download.dir = download.dir, destdir = rep(destdir, 
         length(download.dir)), version = need.install.version, verbose = verbose, github.cfg = github.cfg, 
         nongithub.cfg = nongithub.cfg)
  3: install.github(name = i, destdir = destdir[count], download.dir = download.dir[count], 
         github.cfg = github.cfg, name.saved = name.saved[count], version = version[count], 
         local.source = local.source[count], show.all.versions = show.all.versions, db = db, 
         download.only = download.only, verbose = verbose, showWarnings = showWarnings, 
         dependence.need = dependence.need, extra.list = extra.list, rmcd.parse = rcmd.parse, 
         bash.parse = bash.parse, glue.parse = glue.parse, glue.flag = glue.flag, save.to.db = save.to.db, 
         ...)
  4: git.download(name, download.dir, version, github_url, use_git2r, recursive_clone, 
         verbose)
  5: git2r::clone(github_url, destdir)
  
  cloning into '/tmp/RtmpqJVlP5/denpendence1'...
  ── 3. Error: git.download (@test_install_uilts.R#102)  ─────────────────────────
  SSL error: error:140E0197:SSL routines:SSL_shutdown:shutdown while in init
  1: git.download("github_demo", destdir, "master", url, TRUE, FALSE, FALSE) at testthat/test_install_uilts.R:102
  2: git2r::clone(github_url, destdir)
  
  /tmp/RtmpqJVlP5/destdir.initial not empty, overwrite?[y]
  Please input y/n/Y/N!
  /tmp/RtmpqJVlP5/destdir.initial not empty, overwrite?[y]
  Please input y/n/Y/N!
  /tmp/RtmpqJVlP5/destdir.initial not empty, overwrite?[y]
  More than 3 counts input, default is not to overwrite.
  /tmp/RtmpqJVlP5/destdir.initial existed, overwrite?[y]
  Please input y/n/Y/N!
  /tmp/RtmpqJVlP5/destdir.initial existed, overwrite?[y]
  Please input y/n/Y/N!
  /tmp/RtmpqJVlP5/destdir.initial existed, overwrite?[y]
  More than 3 counts input, default is not to overwrite.
  trying URL 'ftp://ftp.sjtu.edu.cn/pub/CPAN/clpa//README'
  Content type 'unknown' length 107 bytes
  ==================================================
  trying URL 'ftp://ftp.sjtu.edu.cn/pub/CPAN/clpa//index.html'
  Content type 'unknown' length 3574 bytes
  ==================================================
  ══ testthat results  ═══════════════════════════════════════════════════════════
  OK: 66 SKIPPED: 0 FAILED: 3
  1. Error: install.bioinfo (@test_install.R#57) 
  2. Error: dependence (@test_install_uilts.R#88) 
  3. Error: git.download (@test_install_uilts.R#102) 
  
  Error: testthat unit tests failed
  Execution halted