Running examples in ‘SourceSet-Ex.R’ failed
The error most likely occurred in:

> ### Name: infoSource
> ### Title: Get summary statistics on graphs and variables
> ### Aliases: infoSource
> 
> ### ** Examples
> 
> ## Load the SourceSetObj obtained from the source set analysis of ALL dataset
> 
> # see vignette for more details
> print(load(file=system.file("extdata","ALLsourceresult.RData",package = "SourceSet")))
[1] "results.all"
> class(results.all)
[1] "sourceSetList"
> 
> info.all<-infoSource(sourceObj = results.all)
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colMeans, colSums, colnames,
    dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, lengths, mapply, match, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
    rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
    union, unique, unsplit, which, which.max, which.min

> ## results of individual input graphs
> info.all$graph
                               n.primary n.secondary n.graph n.cluster
Axon guidance                          0          50     126         3
Cell cycle                            16          14     111         1
Chronic myeloid leukemia               2          16      67         3
ErbB signaling pathway                 3           5      78         1
Neurotrophin signaling pathway         4           0      98         2
Pathways in cancer                     3          49     263         4
Ras signaling pathway                  2          10     170         2
Viral myocarditis                      7           3      25         6
                               primary.impact total.impact  adj.pvalue
Axon guidance                         0.00000      0.39683 0.005274001
Cell cycle                            0.14414      0.27027 0.004529645
Chronic myeloid leukemia              0.02985      0.26866 0.007864645
ErbB signaling pathway                0.03846      0.10256 0.049538392
Neurotrophin signaling pathway        0.04082      0.04082 0.005274001
Pathways in cancer                    0.01141      0.19772 0.000399960
Ras signaling pathway                 0.01176      0.07059 0.007864645
Viral myocarditis                     0.28000      0.40000 0.000000000
> 
> ## results of individual variables
> # ..that appear in more than one graph and with relevance>0
> info.all.genes<-info.all$variable[info.all$variable$n.graph>1 & info.all$variable$relevance>0,]
> # ..ordered by score
> ind.ord<-order(info.all.genes$relevance,decreasing = TRUE)
Error in .makeSortEnum(decreasing, na.last) : 
  could not find function ".makeSortEnum"
Calls: order -> standardGeneric -> eval -> eval -> eval -> order
Execution halted