* installing *source* package 'vcpen' ... ** package 'vcpen' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: 'g++.exe (GCC) 13.2.0' make[1]: Entering directory '/d/temp/Rtmp2zn1uK/R.INSTALL7c10304748b9/vcpen/src' g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c minque_Rcpp.cpp -o minque_Rcpp.o minque_Rcpp.cpp: In function 'Rcpp::List minque_Rcpp(arma::vec&, arma::mat&, const Rcpp::List&, arma::vec)': minque_Rcpp.cpp:12:7: warning: unused variable 'n_beta' [-Wunused-variable] 12 | int n_beta = X.n_cols; | ^~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c vcpen.cpp -o vcpen.o vcpen.cpp: In function 'Rcpp::List vcpen_Rcpp(arma::vec&, arma::mat&, const Rcpp::List&, arma::vec, arma::vec, double, arma::vec, int, bool)': vcpen.cpp:116:20: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare] 116 | for(int i = 0; i < sigma2.size(); i ++){ | ~~^~~~~~~~~~~~~~~ vcpen.cpp:178:22: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare] 178 | for(int i = 0; i < sigma2.size(); i ++){ | ~~^~~~~~~~~~~~~~~ vcpen.cpp:187:24: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare] 187 | for(int i = 0; i < sigma2.size(); i++){ | ~~^~~~~~~~~~~~~~~ vcpen.cpp:303:26: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare] 303 | for(int i = 0; i < sigma2.size(); i++){ | ~~^~~~~~~~~~~~~~~ vcpen.cpp:154:10: warning: unused variable 'quad' [-Wunused-variable] 154 | double quad = 0.0; | ^~~~ vcpen.cpp: In function 'arma::vec sqrt_vec(arma::vec)': vcpen.cpp:370:19: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare] 370 | for(int i =0; i < x2.size(); i++){ | ~~^~~~~~~~~~~ vcpen.cpp: In function 'double min_root(double, double, double, int, const Rcpp::List&, arma::vec, arma::mat, double, double, arma::vec)': vcpen.cpp:412:20: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare] 412 | for(int i = 0; i < roots.size();i++){ | ~~^~~~~~~~~~~~~~ vcpen.cpp: In function 'arma::vec real_polyroots2(arma::vec)': vcpen.cpp:481:22: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare] 481 | for(int i = 0; i < roots.size(); i++){ | ~~^~~~~~~~~~~~~~ In file included from D:/rtools44/x86_64-w64-mingw32.static.posix/lib/gcc/x86_64-w64-mingw32.static.posix/13.2.0/include/c++/cmath:47, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/platform/compiler.h:100, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/Rcpp/r/headers.h:62, from D:/RCompile/CRANpkg/lib/4.4/Rcpp/include/RcppCommon.h:30, from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25, from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29, from vcpen.cpp:1: In function 'double fabs(double)', inlined from 'double SolveP5_1(double, double, double, double, double)' at vcpen.cpp:851:14: D:/rtools44/x86_64-w64-mingw32.static.posix/include/math.h:228:29: warning: 'dx' may be used uninitialized [-Wmaybe-uninitialized] 228 | return __builtin_fabs (x); | ^ vcpen.cpp: In function 'double SolveP5_1(double, double, double, double, double)': vcpen.cpp:816:16: note: 'dx' was declared here 816 | double dx; | ^~ vcpen.cpp: In function 'Rcpp::List vcpen_Rcpp(arma::vec&, arma::mat&, const Rcpp::List&, arma::vec, arma::vec, double, arma::vec, int, bool)': vcpen.cpp:320:50: warning: 'logllasso_final' may be used uninitialized [-Wmaybe-uninitialized] 320 | logllasso_grid(index_grid) = logllasso_final * double(n_subj); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ vcpen.cpp:104:10: note: 'logllasso_final' was declared here 104 | double logllasso_final; | ^~~~~~~~~~~~~~~ vcpen.cpp:319:40: warning: 'logl_final' may be used uninitialized [-Wmaybe-uninitialized] 319 | logl_grid(index_grid) = logl_final * double(n_subj); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~ vcpen.cpp:105:10: note: 'logl_final' was declared here 105 | double logl_final; | ^~~~~~~~~~ vcpen.cpp:318:27: warning: 'iter_final' may be used uninitialized [-Wmaybe-uninitialized] 318 | iter_grid(index_grid) = iter_final; | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ vcpen.cpp:106:7: note: 'iter_final' was declared here 106 | int iter_final; | ^~~~~~~~~~ g++ -std=gnu++17 -shared -s -static-libgcc -o vcpen.dll tmp.def RcppExports.o minque_Rcpp.o vcpen.o -LD:/RCompile/recent/R-4.4.0/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.0/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.0/bin/x64 -lR make[1]: Leaving directory '/d/temp/Rtmp2zn1uK/R.INSTALL7c10304748b9/vcpen/src' make[1]: Entering directory '/d/temp/Rtmp2zn1uK/R.INSTALL7c10304748b9/vcpen/src' make[1]: Leaving directory '/d/temp/Rtmp2zn1uK/R.INSTALL7c10304748b9/vcpen/src' installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-vcpen/00new/vcpen/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'vcpen' as vcpen_1.9.zip * DONE (vcpen)