* installing *source* package 'pmartR' ... ** package 'pmartR' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: 'g++.exe (GCC) 13.2.0' make[1]: Entering directory '/d/temp/RtmpA3qN7j/R.INSTALL262843be149ba/pmartR/src' g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c calculate_cv.cpp -o calculate_cv.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c count_missing_cpp.cpp -o count_missing_cpp.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c imd_anova.cpp -o imd_anova.o imd_anova.cpp: In function 'arma::mat fold_change_diff_na_okay(arma::mat, arma::mat)': imd_anova.cpp:154:22: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare] 154 | for(int k=0;k m) { | ~~~~~~~~~^~~ imd_anova.cpp:249:25: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare] 249 | for (int k = 0; k < continuous_covar_inds.size(); k++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ imd_anova.cpp:259:31: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'int' [-Wsign-compare] 259 | if (group_ids_pred.n_elem > m) { | ~~~~~~~~~~~~~~~~~~~~~~^~~ imd_anova.cpp: In function 'Rcpp::List two_factor_anova_cpp(arma::mat, arma::mat, arma::mat, arma::colvec, arma::mat, arma::mat, arma::uvec, arma::uvec)': imd_anova.cpp:508:25: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare] 508 | for (int k = 0; k < continuous_covar_inds.size(); k++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ imd_anova.cpp:521:31: warning: comparison of integer expressions of different signedness: 'const arma::uword' {aka 'const unsigned int'} and 'int' [-Wsign-compare] 521 | if (group_ids_pred.n_elem > n_groups) { | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ imd_anova.cpp:481:18: warning: 'sigma2_full' may be used uninitialized [-Wmaybe-uninitialized] 481 | sig_est(i) = sigma2_full; | ~~~~~~~~~~~^~~~~~~~~~~~~ imd_anova.cpp:406:22: note: 'sigma2_full' was declared here 406 | double sigma2_red, sigma2_full; | ^~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kw_rcpp.cpp -o kw_rcpp.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nonmissing_per_grp.cpp -o nonmissing_per_grp.o g++ -std=gnu++17 -shared -s -static-libgcc -o pmartR.dll tmp.def RcppExports.o calculate_cv.o count_missing_cpp.o imd_anova.o kw_rcpp.o nonmissing_per_grp.o -LD:/RCompile/recent/R-4.4.0/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.0/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.0/bin/x64 -lR make[1]: Leaving directory '/d/temp/RtmpA3qN7j/R.INSTALL262843be149ba/pmartR/src' make[1]: Entering directory '/d/temp/RtmpA3qN7j/R.INSTALL262843be149ba/pmartR/src' make[1]: Leaving directory '/d/temp/RtmpA3qN7j/R.INSTALL262843be149ba/pmartR/src' installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-pmartR/00new/pmartR/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'pmartR' as pmartR_2.4.4.zip * DONE (pmartR)