* installing *source* package 'phylocomr' ... ** package 'phylocomr' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 13.2.0' make[1]: Entering directory '/d/temp/Rtmp8wE8i3/R.INSTALL26608253c1146/phylocomr/src' rm -Rf phylocomr.dll nothing.o register.o libphylocom/io.o libphylocom/new2fy.o libphylocom/traits.o libphylocom/comstruct.o libphylocom/nrutil.o libphylocom/fy2new.o libphylocom/bladj.o libphylocom/comnode.o libphylocom/prune.o libphylocom/comtrait.o libphylocom/stats.o libphylocom/combase.o libphylocom/libphylocom.a phylocom ecovolve phylomatic gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/io.c -o libphylocom/io.o gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/new2fy.c -o libphylocom/new2fy.o gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/traits.c -o libphylocom/traits.o gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/comstruct.c -o libphylocom/comstruct.o libphylocom/comstruct.c: In function 'NodeSig': libphylocom/comstruct.c:1241:34: warning: '*test_r[]' may be used uninitialized [-Wmaybe-uninitialized] 1241 | (int) test_r[(int) ((float) RUNS * 0.5)], ordHI, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ libphylocom/comstruct.c:1255:34: warning: '*test_r[]' may be used uninitialized [-Wmaybe-uninitialized] 1255 | (int) test_r[(int) ((float) RUNS * 0.5)], ordHI, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ libphylocom/comstruct.c:1262:32: warning: '*test_r[]' may be used uninitialized [-Wmaybe-uninitialized] 1262 | (int) test_r[(int) ((float) RUNS * 0.5)], ordHI, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/nrutil.c -o libphylocom/nrutil.o gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/fy2new.c -o libphylocom/fy2new.o gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/bladj.c -o libphylocom/bladj.o gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/comnode.c -o libphylocom/comnode.o gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/prune.c -o libphylocom/prune.o gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/comtrait.c -o libphylocom/comtrait.o gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/stats.c -o libphylocom/stats.o gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/combase.c -o libphylocom/combase.o mkdir -p ../inst/bin/x64 ar rcs libphylocom/libphylocom.a libphylocom/io.o libphylocom/new2fy.o libphylocom/traits.o libphylocom/comstruct.o libphylocom/nrutil.o libphylocom/fy2new.o libphylocom/bladj.o libphylocom/comnode.o libphylocom/prune.o libphylocom/comtrait.o libphylocom/stats.o libphylocom/combase.o gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/main.c -o libphylocom/main.o gcc -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -o phylocom libphylocom/main.o -Llibphylocom -lphylocom -lm cp -f phylocom ../inst/bin/x64 gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/ecomain.c -o libphylocom/ecomain.o gcc -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -o ecovolve libphylocom/ecomain.o -Llibphylocom -lphylocom -lm cp -f ecovolve ../inst/bin/x64 gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c libphylocom/phylomatic.c -o libphylocom/phylomatic.o gcc -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -o phylomatic libphylocom/phylomatic.o -Llibphylocom -lphylocom -lm cp -f phylomatic ../inst/bin/x64 gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nothing.c -o nothing.o gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c register.c -o register.o gcc -shared -s -static-libgcc -o phylocomr.dll tmp.def nothing.o register.o -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.0/bin/x64 -lR make[1]: Leaving directory '/d/temp/Rtmp8wE8i3/R.INSTALL26608253c1146/phylocomr/src' make[1]: Entering directory '/d/temp/Rtmp8wE8i3/R.INSTALL26608253c1146/phylocomr/src' make[1]: Leaving directory '/d/temp/Rtmp8wE8i3/R.INSTALL26608253c1146/phylocomr/src' installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-phylocomr/00new/phylocomr/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'phylocomr' as phylocomr_0.3.4.zip * DONE (phylocomr)