* installing *source* package 'nlmixr2est' ... ** package 'nlmixr2est' successfully unpacked and MD5 sums checked ** using staged installation rm: cannot remove 'workaround.Rout': No such file or directory --------[[begin src/Makevars.win]]-------- # -*- mode: makefile-gmake -*- ARMA=D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include BH=D:/RCompile/CRANpkg/lib/4.4/BH/include RCPP=D:/RCompile/CRANpkg/lib/4.4/Rcpp/include RXP=D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include CXX_STD = CXX17 PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) $(SHLIB_OPENMP_CXXFLAGS) PKG_CXXFLAGS = -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"$(BH)" -I"$(RCPP)" -I"$(ARMA)" -I"$(RXP)" $(SHLIB_OPENMP_CXXFLAGS) -DARMA_64BIT_WORD=1 SHLIB_LDFLAGS = $(SHLIB_CXXLDFLAGS) SHLIB_LD = $(SHLIB_CXXLD) SOURCES_C = init.c rprintf.c merge3.c lbfgsR.c utilc.c SOURCES_CPP = nlm.cpp filterNormalLike.cpp inner.cpp shi21.cpp nearPD.cpp censEst.cpp saem.cpp expandNlme.cpp npde.cpp shrink.cpp ires.cpp res.cpp cwres.cpp censResid.cpp cholse.cpp neldermead.cpp resid.cpp slice.cpp RcppExportMod.cpp RcppExports.cpp OBJECTS = $(SOURCES_CPP:.cpp=.o) $(SOURCES_C:.c=.o) all: $(SHLIB) $(SHLIB): $(OBJECTS) --------[[end src/Makevars.win]]-------- ** libs using C compiler: 'gcc.exe (GCC) 13.2.0' using C++ compiler: 'g++.exe (GCC) 13.2.0' using C++17 make[1]: Entering directory '/d/temp/Rtmpiy7t2G/R.INSTALL296cc158a2e81/nlmixr2est/src' g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"D:/RCompile/CRANpkg/lib/4.4/BH/include" -I"D:/RCompile/CRANpkg/lib/4.4/Rcpp/include" -I"D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include" -I"D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include" -fopenmp -DARMA_64BIT_WORD=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nlm.cpp -o nlm.o nlm.cpp: In function 'arma::vec nlmSolveF(arma::vec&)': nlm.cpp:412:7: warning: unused variable 'cores' [-Wunused-variable] 412 | int cores = op->cores; | ^~~~~ nlm.cpp: In function 'arma::mat nlmSolveGrad(arma::vec&)': nlm.cpp:544:7: warning: unused variable 'cores' [-Wunused-variable] 544 | int cores = op->cores; | ^~~~~ nlm.cpp: In function 'Rcpp::NumericVector solveGradNls(arma::vec&, int)': nlm.cpp:627:12: warning: unused variable 'llik' [-Wunused-variable] 627 | double llik; | ^~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"D:/RCompile/CRANpkg/lib/4.4/BH/include" -I"D:/RCompile/CRANpkg/lib/4.4/Rcpp/include" -I"D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include" -I"D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include" -fopenmp -DARMA_64BIT_WORD=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c filterNormalLike.cpp -o filterNormalLike.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"D:/RCompile/CRANpkg/lib/4.4/BH/include" -I"D:/RCompile/CRANpkg/lib/4.4/Rcpp/include" -I"D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include" -I"D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include" -fopenmp -DARMA_64BIT_WORD=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c inner.cpp -o inner.o inner.cpp: In function 'void parHistData(Rcpp::Environment, bool)': inner.cpp:25:30: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare] 25 | #define min2( a , b ) ( (a) < (b) ? (a) : (b) ) | ~~~~^~~~~ inner.cpp:5806:23: note: in expansion of macro 'min2' 5806 | for (i = 0; i < min2(op_focei.npars+1, vals.n_cols); i++){ | ^~~~ inner.cpp:5806:21: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare] 5806 | for (i = 0; i < min2(op_focei.npars+1, vals.n_cols); i++){ | ^ inner.cpp: In function 'Rcpp::List nlmixr2Gill83_(Rcpp::Function, Rcpp::NumericVector, Rcpp::Environment, Rcpp::LogicalVector, double, int, double, double, bool)': inner.cpp:4283:23: warning: 'gillF' may be used uninitialized [-Wmaybe-uninitialized] 4283 | retN[i] = gill83(&hfN[i], &hphifN[i], &gillDfN[i], &gillDf2N[i], &gillErrN[i], | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4284 | theta, i, gillRtol, gillK, gillStep, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 4285 | gillFtol, | ~~~~~~~~~ 4286 | -1, gill83fnG, 0, gillF) + 1; | ~~~~~~~~~~~~~~~~~~~~~~~~ inner.cpp:4275:10: note: 'gillF' was declared here 4275 | double gillF; | ^~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"D:/RCompile/CRANpkg/lib/4.4/BH/include" -I"D:/RCompile/CRANpkg/lib/4.4/Rcpp/include" -I"D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include" -I"D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include" -fopenmp -DARMA_64BIT_WORD=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c shi21.cpp -o shi21.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"D:/RCompile/CRANpkg/lib/4.4/BH/include" -I"D:/RCompile/CRANpkg/lib/4.4/Rcpp/include" -I"D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include" -I"D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include" -fopenmp -DARMA_64BIT_WORD=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nearPD.cpp -o nearPD.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"D:/RCompile/CRANpkg/lib/4.4/BH/include" -I"D:/RCompile/CRANpkg/lib/4.4/Rcpp/include" -I"D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include" -I"D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include" -fopenmp -DARMA_64BIT_WORD=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c censEst.cpp -o censEst.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"D:/RCompile/CRANpkg/lib/4.4/BH/include" -I"D:/RCompile/CRANpkg/lib/4.4/Rcpp/include" -I"D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include" -I"D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include" -fopenmp -DARMA_64BIT_WORD=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c saem.cpp -o saem.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"D:/RCompile/CRANpkg/lib/4.4/BH/include" -I"D:/RCompile/CRANpkg/lib/4.4/Rcpp/include" -I"D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include" -I"D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include" -fopenmp -DARMA_64BIT_WORD=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c expandNlme.cpp -o expandNlme.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"D:/RCompile/CRANpkg/lib/4.4/BH/include" -I"D:/RCompile/CRANpkg/lib/4.4/Rcpp/include" -I"D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include" -I"D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include" -fopenmp -DARMA_64BIT_WORD=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c npde.cpp -o npde.o npde.cpp: In function 'void handleCensNpdeCdf(calcNpdeInfoId&, arma::Col&, arma::vec&, int&, bool&, unsigned int, arma::vec&, arma::vec&, unsigned int&, bool&)': npde.cpp:129:15: warning: variable 'hi' set but not used [-Wunused-but-set-variable] 129 | double low, hi, low2, hi2; | ^~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"D:/RCompile/CRANpkg/lib/4.4/BH/include" -I"D:/RCompile/CRANpkg/lib/4.4/Rcpp/include" -I"D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include" -I"D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include" -fopenmp -DARMA_64BIT_WORD=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c shrink.cpp -o shrink.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"D:/RCompile/CRANpkg/lib/4.4/BH/include" -I"D:/RCompile/CRANpkg/lib/4.4/Rcpp/include" -I"D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include" -I"D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include" -fopenmp -DARMA_64BIT_WORD=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ires.cpp -o ires.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"D:/RCompile/CRANpkg/lib/4.4/BH/include" -I"D:/RCompile/CRANpkg/lib/4.4/Rcpp/include" -I"D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include" -I"D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include" -fopenmp -DARMA_64BIT_WORD=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c res.cpp -o res.o In file included from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/mpl/aux_/na_assert.hpp:23, from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/mpl/arg.hpp:25, from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/mpl/placeholders.hpp:24, from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/iterator/iterator_categories.hpp:16, from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/iterator/iterator_facade.hpp:13, from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/range/iterator_range_core.hpp:27, from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/range/iterator_range.hpp:13, from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/range/as_literal.hpp:18, from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/algorithm/string/trim.hpp:19, from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/algorithm/string.hpp:19, from res.cpp:3: D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses] 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses 194 | failed ************ (Pred::************ | ^~~~~~~~~~~~~~~~~~~ | - 195 | assert_arg( void (*)(Pred), typename assert_arg_pred::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 | ); | ~ | - D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses] 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses 199 | failed ************ (boost::mpl::not_::************ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | - 200 | assert_not_arg( void (*)(Pred), typename assert_arg_pred_not::type ) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 | ); | ~ | - In file included from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/bind/mem_fn.hpp:25, from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/mem_fn.hpp:22, from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/function/detail/prologue.hpp:19, from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/function.hpp:30, from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18, from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/algorithm/string/find_iterator.hpp:24, from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/algorithm/string/iter_find.hpp:27, from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/algorithm/string/split.hpp:16, from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/algorithm/string.hpp:23: D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/get_pointer.hpp:48:40: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 48 | template T * get_pointer(std::auto_ptr const& p) | ^~~~~~~~ In file included from D:/rtools44/x86_64-w64-mingw32.static.posix/lib/gcc/x86_64-w64-mingw32.static.posix/13.2.0/include/c++/memory:78, from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/function/function_base.hpp:34, from D:/RCompile/CRANpkg/lib/4.4/BH/include/boost/function/detail/prologue.hpp:18: D:/rtools44/x86_64-w64-mingw32.static.posix/lib/gcc/x86_64-w64-mingw32.static.posix/13.2.0/include/c++/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ res.cpp: In function 'void calculateDfFull(arma::Col&, arma::mat&, Rcpp::List&, int&, unsigned int&)': res.cpp:17:7: warning: unused variable 'idSize' [-Wunused-variable] 17 | int idSize = ID.size(); | ^~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"D:/RCompile/CRANpkg/lib/4.4/BH/include" -I"D:/RCompile/CRANpkg/lib/4.4/Rcpp/include" -I"D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include" -I"D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include" -fopenmp -DARMA_64BIT_WORD=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cwres.cpp -o cwres.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"D:/RCompile/CRANpkg/lib/4.4/BH/include" -I"D:/RCompile/CRANpkg/lib/4.4/Rcpp/include" -I"D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include" -I"D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include" -fopenmp -DARMA_64BIT_WORD=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c censResid.cpp -o censResid.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"D:/RCompile/CRANpkg/lib/4.4/BH/include" -I"D:/RCompile/CRANpkg/lib/4.4/Rcpp/include" -I"D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include" -I"D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include" -fopenmp -DARMA_64BIT_WORD=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cholse.cpp -o cholse.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"D:/RCompile/CRANpkg/lib/4.4/BH/include" -I"D:/RCompile/CRANpkg/lib/4.4/Rcpp/include" -I"D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include" -I"D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include" -fopenmp -DARMA_64BIT_WORD=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c neldermead.cpp -o neldermead.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"D:/RCompile/CRANpkg/lib/4.4/BH/include" -I"D:/RCompile/CRANpkg/lib/4.4/Rcpp/include" -I"D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include" -I"D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include" -fopenmp -DARMA_64BIT_WORD=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c resid.cpp -o resid.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"D:/RCompile/CRANpkg/lib/4.4/BH/include" -I"D:/RCompile/CRANpkg/lib/4.4/Rcpp/include" -I"D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include" -I"D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include" -fopenmp -DARMA_64BIT_WORD=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c slice.cpp -o slice.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"D:/RCompile/CRANpkg/lib/4.4/BH/include" -I"D:/RCompile/CRANpkg/lib/4.4/Rcpp/include" -I"D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include" -I"D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include" -fopenmp -DARMA_64BIT_WORD=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExportMod.cpp -o RcppExportMod.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -Id -I../inst/include -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -I"D:/RCompile/CRANpkg/lib/4.4/BH/include" -I"D:/RCompile/CRANpkg/lib/4.4/Rcpp/include" -I"D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include" -I"D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include" -fopenmp -DARMA_64BIT_WORD=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rprintf.c -o rprintf.o gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c merge3.c -o merge3.o gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lbfgsR.c -o lbfgsR.o gcc -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/BH/include' -I'D:/RCompile/CRANpkg/lib/4.4/lbfgsb3c/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2parse/include' -I'D:/RCompile/CRANpkg/lib/4.4/rxode2random/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c utilc.c -o utilc.o g++ -shared -s -static-libgcc -o nlmixr2est.dll tmp.def nlm.o filterNormalLike.o inner.o shi21.o nearPD.o censEst.o saem.o expandNlme.o npde.o shrink.o ires.o res.o cwres.o censResid.o cholse.o neldermead.o resid.o slice.o RcppExportMod.o RcppExports.o init.o rprintf.o merge3.o lbfgsR.o utilc.o -LD:/RCompile/recent/R-4.4.0/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.0/bin/x64 -lRblas -lgfortran -lm -lquadmath -fopenmp -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.0/bin/x64 -lR make[1]: Leaving directory '/d/temp/Rtmpiy7t2G/R.INSTALL296cc158a2e81/nlmixr2est/src' make[1]: Entering directory '/d/temp/Rtmpiy7t2G/R.INSTALL296cc158a2e81/nlmixr2est/src' make[1]: Leaving directory '/d/temp/Rtmpiy7t2G/R.INSTALL296cc158a2e81/nlmixr2est/src' installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-nlmixr2est/00new/nlmixr2est/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'nlmixr2est' as nlmixr2est_2.2.1.zip * DONE (nlmixr2est)