* installing *source* package 'mvabund' ... ** package 'mvabund' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: 'g++.exe (GCC) 13.2.0' using C++11 make[1]: Entering directory '/d/temp/RtmpiyJp3x/R.INSTALL2b3c2e4b237f/mvabund/src' g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rinterface.cpp -o Rinterface.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c anova.cpp -o anova.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c calctest.cpp -o calctest.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c glm.cpp -o glm.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c glmtest.cpp -o glmtest.o glmtest.cpp: In member function 'int GlmTest::resampNonCase(glm*, gsl_matrix*, unsigned int)': glmtest.cpp:849:23: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] 849 | gsl_sort_index(permid, tmp, 1, nRows); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from resampTest.h:26, from glmtest.cpp:5: D:/rtools44/x86_64-w64-mingw32.static.posix/include/gsl/gsl_sort_double.h:41:6: note: by argument 2 of type 'const double*' to 'void gsl_sort_index(size_t*, const double*, size_t, size_t)' declared here 41 | void gsl_sort_index (size_t * p, const double * data, const size_t stride, const size_t n); | ^~~~~~~~~~~~~~ glmtest.cpp:876:23: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized] 876 | gsl_sort_index(permid, tmp, 1, nRows); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ D:/rtools44/x86_64-w64-mingw32.static.posix/include/gsl/gsl_sort_double.h:41:6: note: by argument 2 of type 'const double*' to 'void gsl_sort_index(size_t*, const double*, size_t, size_t)' declared here 41 | void gsl_sort_index (size_t * p, const double * data, const size_t stride, const size_t n); | ^~~~~~~~~~~~~~ g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c io.cpp -o io.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rnd.cpp -o rnd.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c simutility.cpp -o simutility.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I/include -I. -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppGSL/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c summary.cpp -o summary.o g++ -shared -s -static-libgcc -o mvabund.dll tmp.def RcppExports.o Rinterface.o anova.o calctest.o glm.o glmtest.o io.o rnd.o simutility.o summary.o -L/lib -lgsl -lgslcblas -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.0/bin/x64 -lR make[1]: Leaving directory '/d/temp/RtmpiyJp3x/R.INSTALL2b3c2e4b237f/mvabund/src' make[1]: Entering directory '/d/temp/RtmpiyJp3x/R.INSTALL2b3c2e4b237f/mvabund/src' make[1]: Leaving directory '/d/temp/RtmpiyJp3x/R.INSTALL2b3c2e4b237f/mvabund/src' installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-mvabund/00new/mvabund/libs/x64 ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'mvabund' as mvabund_4.2.1.zip * DONE (mvabund)