* installing *source* package 'junctions' ...
** package 'junctions' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.2.0'
make[1]: Entering directory '/d/temp/RtmpkvwyT9/R.INSTALL205a866796d77/junctions/src'
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/nloptr/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppParallel/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -DRCPP_PARALLEL_USE_TBB=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Fish.cpp -o Fish.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/nloptr/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppParallel/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -DRCPP_PARALLEL_USE_TBB=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Output.cpp -o Output.o
Output.cpp: In function 'std::vector<int> detect_ancestry(const std::vector<junction>&, const std::vector<double>&)':
Output.cpp:100:18: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<junction>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  100 |         for (; j <= (G.size() - 1); ++j) {
      |                ~~^~~~~~~~~~~~~~~~~
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/nloptr/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppParallel/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -DRCPP_PARALLEL_USE_TBB=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/nloptr/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppParallel/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -DRCPP_PARALLEL_USE_TBB=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c backcrossing.cpp -o backcrossing.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/nloptr/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppParallel/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -DRCPP_PARALLEL_USE_TBB=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c estimate_time_unphased.cpp -o estimate_time_unphased.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/nloptr/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppParallel/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -DRCPP_PARALLEL_USE_TBB=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c main_functions.cpp -o main_functions.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/nloptr/include' -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppParallel/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -DRCPP_PARALLEL_USE_TBB=1   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c unphased.cpp -o unphased.o
unphased.cpp: In function 'void update_pop(const std::vector<Fish_inf>&, std::vector<Fish_inf>&, int, double, int)':
unphased.cpp:37:26: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
   37 |     for (size_t i = 0; i < popSize; ++i) {
      |                        ~~^~~~~~~~~
unphased.cpp: In function 'Output simulation_phased_nonphased(int, double, int, double, std::vector<double>, const Rcpp::NumericVector&, bool, bool, int, int, rnd_t&)':
unphased.cpp:104:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'int' [-Wsign-compare]
  104 |   for (size_t t = 0; t <= maxTime; ++t) {
      |                      ~~^~~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o junctions.dll tmp.def Fish.o Output.o RcppExports.o backcrossing.o estimate_time_unphased.o main_functions.o unphased.o -LD:/RCompile/CRANpkg/lib/4.4/RcppParallel/lib/x64 -ltbb -ltbbmalloc -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.0/bin/x64 -lR
make[1]: Leaving directory '/d/temp/RtmpkvwyT9/R.INSTALL205a866796d77/junctions/src'
make[1]: Entering directory '/d/temp/RtmpkvwyT9/R.INSTALL205a866796d77/junctions/src'
make[1]: Leaving directory '/d/temp/RtmpkvwyT9/R.INSTALL205a866796d77/junctions/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-junctions/00new/junctions/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'junctions' as junctions_2.1.0.zip
* DONE (junctions)