* installing *source* package 'bigstatsr' ...
** package 'bigstatsr' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.2.0'
using C++11
make[1]: Entering directory '/d/temp/Rtmpuyre6t/R.INSTALL1100859902d24/bigstatsr/src'
g++  -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c AUC.cpp -o AUC.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c FBM-extract.cpp -o FBM-extract.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c FBM-replace.cpp -o FBM-replace.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c FBM-xptr.cpp -o FBM-xptr.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c arma-prod-self-sub.cpp -o arma-prod-self-sub.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c arma-prod-sub.cpp -o arma-prod-sub.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c arma-prod.cpp -o arma-prod.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c biglassoLin.cpp -o biglassoLin.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c biglassoLog.cpp -o biglassoLog.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c biglassoUtils.cpp -o biglassoUtils.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c colstats.cpp -o colstats.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c counts.cpp -o counts.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c errorMsgs.cpp -o errorMsgs.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c prodMatVec.cpp -o prodMatVec.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c transpose.cpp -o transpose.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c univRegLin5.cpp -o univRegLin5.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c univRegLog.cpp -o univRegLog.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.4/rmio/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -I../inst/include -fopenmp -DARMA_DONT_PRINT_OPENMP_WARNING -DARMA_DONT_PRINT_CXX11_WARNING -DARMA_64BIT_WORD=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c utils-mat.cpp -o utils-mat.o
g++ -shared -s -static-libgcc -o bigstatsr.dll tmp.def AUC.o FBM-extract.o FBM-replace.o FBM-xptr.o RcppExports.o arma-prod-self-sub.o arma-prod-sub.o arma-prod.o biglassoLin.o biglassoLog.o biglassoUtils.o colstats.o counts.o errorMsgs.o prodMatVec.o transpose.o univRegLin5.o univRegLog.o utils-mat.o -fopenmp -LD:/RCompile/recent/R-4.4.0/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.0/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.0/bin/x64 -lR
make[1]: Leaving directory '/d/temp/Rtmpuyre6t/R.INSTALL1100859902d24/bigstatsr/src'
make[1]: Entering directory '/d/temp/Rtmpuyre6t/R.INSTALL1100859902d24/bigstatsr/src'
make[1]: Leaving directory '/d/temp/Rtmpuyre6t/R.INSTALL1100859902d24/bigstatsr/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-bigstatsr/00new/bigstatsr/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'typeof' from package 'base' in package 'bigstatsr'
Creating a generic function for 'diag' from package 'base' in package 'bigstatsr'
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'bigstatsr' as bigstatsr_1.5.12.zip
* DONE (bigstatsr)