Check results for 'arrayImpute'

using R version 2.7.2 RC (2008-08-18 r46382)
using session charset: ISO8859-1

checking for file 'arrayImpute/DESCRIPTION' ... OK

this is package 'arrayImpute' version '1.3'

checking package dependencies ... OK

checking if this is a source package ... OK

checking whether package 'arrayImpute' can be installed ... OK

checking package directory ... OK

checking for portable file names ... OK

checking DESCRIPTION meta-information ... OK

checking top-level files ... OK

checking index information ... OK

checking package subdirectories ... OK

checking R files for non-ASCII characters ... OK

checking R files for syntax errors ... OK

checking whether the package can be loaded ... OK

checking whether the package can be loaded with stated dependencies ... OK

checking for unstated dependencies in R code ... WARNING
(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2508): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2508): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2508): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
options(warn=1,warnEscapes=FALSE);tools:::.check_packages_used(package="arrayImpute")
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
checking S3 generic/method consistency ... WARNING
(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1168): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
tools::checkS3methods(package = "arrayImpute")
See section 'Generic functions and methods' of the 'Writing R Extensions'
manual.
checking replacement functions ... WARNING
(Rterm.exe:4020): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:4020): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:4020): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
tools::checkReplaceFuns(package = "arrayImpute")
In R, the argument of a replacement function which corresponds to the right
hand side must be named 'value'.
checking foreign function calls ... WARNING
(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:1860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:1860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
tools::checkFF(package = "arrayImpute")
See the chapter 'System and foreign language interfaces' of the 'Writing R
Extensions' manual.
checking R code for possible problems ... NOTE
(Rterm.exe:2860): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2860): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2860): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2860): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2860): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
tools:::.check_code_usage_in_package(package = "arrayImpute")
arrayImpute: no visible binding for '<<-' assignment to 'K'
arrayImpute: no visible binding for '<<-' assignment to 'Result.Save'
arrayImpute: no visible binding for '<<-' assignment to 'high.list'
arrayImpute: no visible binding for '<<-' assignment to
'high.chip.list'
arrayImpute: no visible binding for '<<-' assignment to 'gene.location'
arrayImpute: no visible binding for '<<-' assignment to 'true.flag'
arrayImpute : geneListSelectRow.handler: no visible binding for '<<-'
assignment to 'high.list'
arrayImpute : geneListSelectRow.handler: no visible binding for global
variable 'high.list'
arrayImpute : geneListUnselectRow.handler: no visible binding for '<<-'
assignment to 'high.list'
arrayImpute : geneListUnselectRow.handler: no visible binding for
global variable 'high.list'
arrayImpute : chipListSelectRow.handler: no visible binding for '<<-'
assignment to 'high.chip.list'
arrayImpute : chipListSelectRow.handler: no visible binding for global
variable 'high.chip.list'
arrayImpute : chipListUnselectRow.handler: no visible binding for '<<-'
assignment to 'high.chip.list'
arrayImpute : chipListUnselectRow.handler: no visible binding for
global variable 'high.chip.list'
arrayImpute : showMissingList: no visible binding for global variable
'geneList'
arrayImpute : showChipList: no visible binding for '<<-' assignment to
'chip.name'
arrayImpute : showChipList: no visible binding for global variable
'data.missing'
arrayImpute : showChipList: no visible binding for global variable
'chip.name'
arrayImpute : showChipList: no visible binding for global variable
'ChipList'
arrayImpute : removeMissingList: no visible binding for global variable
'geneList'
arrayImpute : Mnu.read.file.handler : <anonymous>: no visible binding
for '<<-' assignment to 'data.missing'
arrayImpute : Mnu.read.file.handler : <anonymous>: no visible binding
for '<<-' assignment to 'exp.info.name'
arrayImpute : Mnu.read.file.handler : <anonymous>: no visible binding
for global variable 'data.missing'
arrayImpute : Mnu.read.file.handler : <anonymous>: no visible binding
for '<<-' assignment to 'AVE.impute'
arrayImpute : Mnu.read.file.handler : <anonymous>: no visible binding
for global variable 'missing.I'
arrayImpute : Mnu.read.file.handler : <anonymous>: no visible binding
for '<<-' assignment to 'missing.Name'
arrayImpute : Mnu.read.file.handler : <anonymous>: no visible binding
for global variable 'missing.Name'
arrayImpute : Mnu.read.file.handler : <anonymous>: no visible binding
for global variable 'AVE.impute'
arrayImpute : Mnu.read.file.handler : <anonymous>: no visible binding
for global variable 'exp.info.name'
arrayImpute : Mnu.read.file.handler : <anonymous>: no visible binding
for '<<-' assignment to 'Result.Save'
arrayImpute : Mnu.read.file.handler : <anonymous>: no visible binding
for global variable 'Result.Save'
arrayImpute : Mnu.read.file.handler : <anonymous>: no visible binding
for global variable 'new.text'
arrayImpute : Mnu.read.file.handler : <anonymous>: no visible binding
for global variable 'outputText'
arrayImpute : Mnu.read.location.file.handler : <anonymous>: no visible
binding for '<<-' assignment to 'gene.location'
arrayImpute : Mnu.read.location.file.handler : <anonymous>: no visible
binding for '<<-' assignment to 'gene.location.o'
arrayImpute : Mnu.read.location.file.handler : <anonymous>: no visible
binding for '<<-' assignment to 'exp.info.name'
arrayImpute : Mnu.read.location.file.handler : <anonymous>: no visible
binding for global variable 'gene.location.o'
arrayImpute : missing.indicator: no visible binding for '<<-'
assignment to 'missing.I'
arrayImpute : missing.indicator: no visible binding for '<<-'
assignment to 'missing.Name'
arrayImpute : missing.indicator: no visible binding for global variable
'missing.Name'
arrayImpute : missing.indicator: no visible binding for global variable
'missing.I'
arrayImpute : missing.indicator: no visible binding for '<<-'
assignment to 'missing.Name.temp'
arrayImpute : missing.indicator: no visible binding for '<<-'
assignment to 'miss.temp'
arrayImpute : missing.indicator: no visible binding for '<<-'
assignment to 'kNN.impute'
arrayImpute : missing.indicator: no visible binding for global variable
'missing.Name.temp'
arrayImpute : missing.indicator: no visible binding for '<<-'
assignment to 'LLS.impute'
arrayImpute : missing.indicator: no visible binding for '<<-'
assignment to 'RLSP.impute'
arrayImpute : missing.indicator: no visible binding for '<<-'
assignment to 'BPCA.impute'
arrayImpute : missing.indicator: no visible binding for '<<-'
assignment to 'User1.impute'
arrayImpute : missing.indicator: no visible binding for '<<-'
assignment to 'User2.impute'
arrayImpute : Mnu.save.result.handler: no visible binding for global
variable 'kNN.impute'
arrayImpute : Mnu.save.result.handler: no visible binding for global
variable 'data.missing'
arrayImpute : Mnu.save.result.handler: no visible binding for global
variable 'LLS.impute'
arrayImpute : Mnu.save.result.handler: no visible binding for global
variable 'RLSP.impute'
arrayImpute : Mnu.save.result.handler: no visible binding for global
variable 'BPCA.impute'
arrayImpute : Mnu.exit.handler: no visible binding for global variable
'main'
arrayImpute : Mnu.kNNimpute.handler: no visible binding for '<<-'
assignment to 'Result.Save'
arrayImpute : Mnu.kNNimpute.handler: no visible binding for global
variable 'Result.Save'
arrayImpute : Mnu.kNNimpute.handler: no visible binding for global
variable 'new.text'
arrayImpute : Mnu.kNNimpute.handler: no visible binding for global
variable 'outputText'
arrayImpute : Mnu.LLSimpute.handler: no visible binding for '<<-'
assignment to 'pc.n.flag'
arrayImpute : Mnu.LLSimpute.handler: no visible binding for '<<-'
assignment to 'Result.Save'
arrayImpute : Mnu.LLSimpute.handler: no visible binding for global
variable 'Result.Save'
arrayImpute : Mnu.LLSimpute.handler: no visible binding for global
variable 'new.text'
arrayImpute : Mnu.LLSimpute.handler: no visible binding for global
variable 'outputText'
arrayImpute : Mnu.RLSPimpute.handler: no visible binding for '<<-'
assignment to 'pc.n.flag'
arrayImpute : Mnu.RLSPimpute.handler: no visible binding for '<<-'
assignment to 'Result.Save'
arrayImpute : Mnu.RLSPimpute.handler: no visible binding for global
variable 'Result.Save'
arrayImpute : Mnu.RLSPimpute.handler: no visible binding for global
variable 'new.text'
arrayImpute : Mnu.RLSPimpute.handler: no visible binding for global
variable 'outputText'
arrayImpute : Mnu.BPCAimpute.handler: no visible binding for '<<-'
assignment to 'Result.Save'
arrayImpute : Mnu.BPCAimpute.handler: no visible binding for global
variable 'Result.Save'
arrayImpute : Mnu.BPCAimpute.handler: no visible binding for global
variable 'new.text'
arrayImpute : Mnu.BPCAimpute.handler: no visible binding for global
variable 'outputText'
arrayImpute : Mnu.UserDef1.handler : <anonymous>: no visible binding
for '<<-' assignment to 'User1.impute'
arrayImpute : Mnu.UserDef1.handler : <anonymous>: no visible binding
for global variable 'User1.impute'
arrayImpute : Mnu.UserDef1.handler : <anonymous>: no visible binding
for global variable 'data.missing'
arrayImpute : Mnu.UserDef1.handler : <anonymous>: no visible binding
for '<<-' assignment to 'missing.Name'
arrayImpute : Mnu.UserDef1.handler : <anonymous>: no visible binding
for global variable 'missing.Name.temp'
arrayImpute : Mnu.UserDef1.handler : <anonymous>: no visible binding
for global variable 'AVE.impute'
arrayImpute : Mnu.UserDef1.handler : <anonymous>: no visible binding
for global variable 'kNN.impute'
arrayImpute : Mnu.UserDef1.handler : <anonymous>: no visible binding
for global variable 'LLS.impute'
arrayImpute : Mnu.UserDef1.handler : <anonymous>: no visible binding
for global variable 'RLSP.impute'
arrayImpute : Mnu.UserDef1.handler : <anonymous>: no visible binding
for global variable 'BPCA.impute'
arrayImpute : Mnu.UserDef1.handler : <anonymous>: no visible binding
for global variable 'User2.impute'
arrayImpute : Mnu.UserDef1.handler : <anonymous>: no visible binding
for global variable 'missing.Name'
arrayImpute : Mnu.UserDef2.handler : <anonymous>: no visible binding
for '<<-' assignment to 'User2.impute'
arrayImpute : Mnu.UserDef2.handler : <anonymous>: no visible binding
for global variable 'User2.impute'
arrayImpute : Mnu.UserDef2.handler : <anonymous>: no visible binding
for global variable 'data.missing'
arrayImpute : Mnu.UserDef2.handler : <anonymous>: no visible binding
for '<<-' assignment to 'missing.Name'
arrayImpute : Mnu.UserDef2.handler : <anonymous>: no visible binding
for global variable 'missing.Name.temp'
arrayImpute : Mnu.UserDef2.handler : <anonymous>: no visible binding
for global variable 'AVE.impute'
arrayImpute : Mnu.UserDef2.handler : <anonymous>: no visible binding
for global variable 'kNN.impute'
arrayImpute : Mnu.UserDef2.handler : <anonymous>: no visible binding
for global variable 'LLS.impute'
arrayImpute : Mnu.UserDef2.handler : <anonymous>: no visible binding
for global variable 'RLSP.impute'
arrayImpute : Mnu.UserDef2.handler : <anonymous>: no visible binding
for global variable 'BPCA.impute'
arrayImpute : Mnu.UserDef2.handler : <anonymous>: no visible binding
for global variable 'User1.impute'
arrayImpute : Mnu.UserDef2.handler : <anonymous>: no visible binding
for global variable 'missing.Name'
arrayImpute : subwindow: no visible binding for '<<-' assignment to
'Method'
arrayImpute : subwindow : ok.handler: no visible binding for '<<-'
assignment to 'K'
arrayImpute : subwindow : ok.handler: no visible binding for global
variable 'KK'
arrayImpute : subwindow : ok.handler: no visible binding for global
variable 'K'
arrayImpute : subwindow : ok.handler: no visible binding for global
variable 'data.missing'
arrayImpute : subwindow : ok.handler: no visible binding for global
variable 'k.input'
arrayImpute : subwindow : cancel.handler: no visible binding for global
variable 'k.input'
arrayImpute : subwindow : check.handler: no visible binding for global
variable 'Method'
arrayImpute : subwindow : check.handler : <anonymous>: no visible
binding for '<<-' assignment to 'impute'
arrayImpute : subwindow : check.handler : <anonymous>: no visible
binding for '<<-' assignment to 'exp.info.name'
arrayImpute : subwindow : check.handler : <anonymous>: no visible
binding for global variable 'impute'
arrayImpute : subwindow : check.handler : <anonymous>: no visible
binding for global variable 'data.missing'
arrayImpute : subwindow : check.handler : <anonymous>: no visible
binding for '<<-' assignment to 'kNN.impute'
arrayImpute : subwindow : check.handler : <anonymous>: no visible
binding for '<<-' assignment to 'BPCA.impute'
arrayImpute : subwindow : check.handler : <anonymous>: no visible
binding for '<<-' assignment to 'LLS.impute'
arrayImpute : subwindow : check.handler : <anonymous>: no visible
binding for '<<-' assignment to 'RLSP.impute'
arrayImpute : subwindow : check.handler : <anonymous>: no visible
binding for '<<-' assignment to 'missing.Name'
arrayImpute : subwindow : check.handler : <anonymous>: no visible
binding for global variable 'missing.Name.temp'
arrayImpute : subwindow : check.handler : <anonymous>: no visible
binding for global variable 'AVE.impute'
arrayImpute : subwindow : check.handler : <anonymous>: no visible
binding for global variable 'kNN.impute'
arrayImpute : subwindow : check.handler : <anonymous>: no visible
binding for global variable 'LLS.impute'
arrayImpute : subwindow : check.handler : <anonymous>: no visible
binding for global variable 'RLSP.impute'
arrayImpute : subwindow : check.handler : <anonymous>: no visible
binding for global variable 'BPCA.impute'
arrayImpute : subwindow : check.handler : <anonymous>: no visible
binding for global variable 'User1.impute'
arrayImpute : subwindow : check.handler : <anonymous>: no visible
binding for global variable 'User2.impute'
arrayImpute : subwindow : check.handler : <anonymous>: no visible
binding for global variable 'missing.Name'
arrayImpute : subwindow : check.handler: no visible binding for global
variable 'k.input'
arrayImpute : subwindow: no visible binding for '<<-' assignment to
'k.input'
arrayImpute : subwindow: no visible binding for '<<-' assignment to
'KK'
arrayImpute : subwindow: no visible binding for global variable 'KK'
arrayImpute : subwindow: no visible binding for global variable
'k.input'
arrayImpute : kNNimpute: no visible binding for '<<-' assignment to
'kNNimpute.temp'
arrayImpute : kNNimpute: no visible binding for global variable
'data.missing'
arrayImpute : kNNimpute: no visible binding for '<<-' assignment to
'kNN.impute'
arrayImpute : kNNimpute: no visible binding for global variable
'kNNimpute.temp'
arrayImpute : kNNimpute: no visible binding for '<<-' assignment to
'missing.Name'
arrayImpute : kNNimpute: no visible binding for global variable
'missing.Name.temp'
arrayImpute : kNNimpute: no visible binding for global variable
'AVE.impute'
arrayImpute : kNNimpute: no visible binding for global variable
'kNN.impute'
arrayImpute : kNNimpute: no visible binding for global variable
'LLS.impute'
arrayImpute : kNNimpute: no visible binding for global variable
'RLSP.impute'
arrayImpute : kNNimpute: no visible binding for global variable
'BPCA.impute'
arrayImpute : kNNimpute: no visible binding for global variable
'User1.impute'
arrayImpute : kNNimpute: no visible binding for global variable
'User2.impute'
arrayImpute : kNNimpute: no visible binding for global variable
'missing.Name'
arrayImpute : LSimpute: no visible binding for '<<-' assignment to
'LLS.impute'
arrayImpute : LSimpute: no visible binding for global variable
'LLS.impute'
arrayImpute : LSimpute: no visible binding for '<<-' assignment to
'missing.Name'
arrayImpute : LSimpute: no visible binding for global variable
'missing.Name.temp'
arrayImpute : LSimpute: no visible binding for global variable
'AVE.impute'
arrayImpute : LSimpute: no visible binding for global variable
'kNN.impute'
arrayImpute : LSimpute: no visible binding for global variable
'RLSP.impute'
arrayImpute : LSimpute: no visible binding for global variable
'BPCA.impute'
arrayImpute : LSimpute: no visible binding for global variable
'User1.impute'
arrayImpute : LSimpute: no visible binding for global variable
'User2.impute'
arrayImpute : LSimpute: no visible binding for global variable
'missing.Name'
arrayImpute : LSimpute: no visible binding for '<<-' assignment to
'LS.flag'
arrayImpute : RLSPimpute: no visible binding for '<<-' assignment to
'RLSP.impute'
arrayImpute : RLSPimpute: no visible binding for global variable
'data.missing'
arrayImpute : RLSPimpute: no visible binding for global variable
'RLSP.impute'
arrayImpute : RLSPimpute: no visible binding for '<<-' assignment to
'missing.Name'
arrayImpute : RLSPimpute: no visible binding for global variable
'missing.Name.temp'
arrayImpute : RLSPimpute: no visible binding for global variable
'AVE.impute'
arrayImpute : RLSPimpute: no visible binding for global variable
'kNN.impute'
arrayImpute : RLSPimpute: no visible binding for global variable
'LLS.impute'
arrayImpute : RLSPimpute: no visible binding for global variable
'BPCA.impute'
arrayImpute : RLSPimpute: no visible binding for global variable
'User1.impute'
arrayImpute : RLSPimpute: no visible binding for global variable
'User2.impute'
arrayImpute : RLSPimpute: no visible binding for global variable
'missing.Name'
arrayImpute : RLSPimpute: no visible binding for '<<-' assignment to
'RLSP.flag'
arrayImpute : BPCAfill: no visible binding for '<<-' assignment to
'BPCA.impute'
arrayImpute : BPCAfill: no visible binding for '<<-' assignment to
'missing.Name'
arrayImpute : BPCAfill: no visible binding for global variable
'missing.Name.temp'
arrayImpute : BPCAfill: no visible binding for global variable
'AVE.impute'
arrayImpute : BPCAfill: no visible binding for global variable
'kNN.impute'
arrayImpute : BPCAfill: no visible binding for global variable
'LLS.impute'
arrayImpute : BPCAfill: no visible binding for global variable
'RLSP.impute'
arrayImpute : BPCAfill: no visible binding for global variable
'BPCA.impute'
arrayImpute : BPCAfill: no visible binding for global variable
'User1.impute'
arrayImpute : BPCAfill: no visible binding for global variable
'User2.impute'
arrayImpute : BPCAfill: no visible binding for global variable
'missing.Name'
arrayImpute: no visible binding for '<<-' assignment to 'main'
arrayImpute: no visible binding for global variable 'main'
arrayImpute: no visible binding for '<<-' assignment to 'geneList'
arrayImpute: no visible binding for global variable 'geneList'
arrayImpute: no visible binding for '<<-' assignment to 'ChipList'
arrayImpute: no visible binding for global variable 'ChipList'
arrayImpute: no visible binding for '<<-' assignment to 'outputText'
arrayImpute: no visible binding for global variable 'outputText'
arrayImpute: no visible binding for '<<-' assignment to 'new.text'
(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3532): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
tools:::.check_T_and_F(package = "arrayImpute")
Found possibly global 'T' or 'F' in the following function:
arrayImpute

checking Rd files ... OK

checking Rd cross-references ... OK

checking for missing documentation entries ... WARNING
(Rterm.exe:904): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:904): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:904): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:904): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:904): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:904): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:904): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:904): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:904): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:904): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:904): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:904): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:904): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:904): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:904): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:904): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:904): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:904): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:904): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:904): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:904): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:904): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:904): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:904): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:904): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:904): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:904): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:904): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:904): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
tools::undoc(package = "arrayImpute")
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
checking for code/documentation mismatches ... WARNING
(Rterm.exe:3692): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:3692): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:3692): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.
tools::codoc(package = "arrayImpute")
(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2936): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2936): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2936): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2936): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2936): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2936): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2936): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2936): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2936): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2936): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2936): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.
tools::codocData(package = "arrayImpute")
(Rterm.exe:3476): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:3476): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:3476): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:3476): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3476): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3476): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:3476): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3476): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:3476): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
tools::codocClasses(package = "arrayImpute")
checking Rd \usage sections ... NOTE
(Rterm.exe:2732): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2732): GLib-WARNING **: g_main_context_check() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2732): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2732): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2732): GLib-WARNING **: g_main_context_prepare() called recursively from within a source's check() or prepare() member.

(Rterm.exe:2732): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2732): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2732): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2732): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2732): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread

(Rterm.exe:2732): GLib-WARNING **: g_main_context_prepare(): main loop already active in another thread
tools::checkDocStyle(package = "arrayImpute")
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.

creating arrayImpute-Ex.R ... OK

checking examples ... WARNING
Found the following significant warnings:
Warning: 'gtkCListNew' is deprecated.
Warning: 'gtkCListNew' is deprecated.
Warning: 'method' is deprecated.
Warning: 'method' is deprecated.
Warning: 'method' is deprecated.
Deprecated functions may be defunct as soon as of the next release of R.
See ?Deprecated.

creating arrayImpute-manual.tex ... OK

checking arrayImpute-manual.tex using pdflatex ... OK