* installing *source* package 'TiPS' ...
** package 'TiPS' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.2.0'
make[1]: Entering directory '/d/temp/RtmpUbefBS/R.INSTALL172c4366b1a91/TiPS/src'
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Compartment.cpp -o Compartment.o
Compartment.cpp: In member function 'Node* Compartment::popNonSampledNode(const long int&)':
Compartment.cpp:84:44: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const long int' [-Wsign-compare]
   84 |         for (i=0 ; i<nodes_.size() && count<=index ; i++){
      |                                       ~~~~~^~~~~~~
Compartment.cpp: In member function 'bool Compartment::updateNodes()':
Compartment.cpp:99:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'long int' [-Wsign-compare]
   99 |         for (unsigned i=0 ; i<oldNodes_ ; i++){
      |                             ~^~~~~~~~~~
Compartment.cpp: In member function 'void Compartment::update()':
Compartment.cpp:117:30: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'long int' [-Wsign-compare]
  117 |         for (unsigned i=0 ; i<oldNodes_ ; i++){
      |                             ~^~~~~~~~~~
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Node.cpp -o Node.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Phyloepid.cpp -o Phyloepid.o
Phyloepid.cpp: In member function 'bool Phyloepid::simulationTree()':
Phyloepid.cpp:76:46: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
   76 |                 if (roots_[0]->getNbLeaves() != nbdates_){
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
Phyloepid.cpp:91:40: warning: unused variable 'height' [-Wunused-variable]
   91 |                                 double height = tmpSon->getHeight() ;
      |                                        ^~~~~~
Phyloepid.cpp:98:54: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
   98 |                         if (roots_[0]->getNbLeaves() != nbdates_){
      |                             ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
Phyloepid.cpp: In member function 'void Phyloepid::initCompartments()':
Phyloepid.cpp:218:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  218 |         for (int i = 0; i < demes_.size(); ++i){
      |                         ~~^~~~~~~~~~~~~~~
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Reaction.cpp -o Reaction.o
g++ -std=gnu++17 -shared -s -static-libgcc -o TiPS.dll tmp.def Compartment.o Node.o Phyloepid.o RcppExports.o Reaction.o -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.0/bin/x64 -lR
make[1]: Leaving directory '/d/temp/RtmpUbefBS/R.INSTALL172c4366b1a91/TiPS/src'
make[1]: Entering directory '/d/temp/RtmpUbefBS/R.INSTALL172c4366b1a91/TiPS/src'
make[1]: Leaving directory '/d/temp/RtmpUbefBS/R.INSTALL172c4366b1a91/TiPS/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-TiPS/00new/TiPS/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'TiPS' as TiPS_1.2.3.zip
* DONE (TiPS)