* installing *source* package 'Rtwobitlib' ...
** package 'Rtwobitlib' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
make[1]: Entering directory '/d/temp/RtmpKAm3yO/R.INSTALL4fa85cd4c6a/Rtwobitlib/src'
cd "kent" && make -f "Makefile.Rtwobitlib.win"
make[2]: Entering directory '/d/temp/RtmpKAm3yO/R.INSTALL4fa85cd4c6a/Rtwobitlib/src/kent'
gcc -c -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fpic -ID:/RCompile/recent/R-4.4.0/include -D_FILE_OFFSET_BITS=64 common.c -o common.o
gcc -c -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fpic -ID:/RCompile/recent/R-4.4.0/include -D_FILE_OFFSET_BITS=64 localmem.c -o localmem.o
gcc -c -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fpic -ID:/RCompile/recent/R-4.4.0/include -D_FILE_OFFSET_BITS=64 errAbort.c -o errAbort.o
gcc -c -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fpic -ID:/RCompile/recent/R-4.4.0/include -D_FILE_OFFSET_BITS=64 hash.c -o hash.o
gcc -c -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fpic -ID:/RCompile/recent/R-4.4.0/include -D_FILE_OFFSET_BITS=64 bits.c -o bits.o
gcc -c -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fpic -ID:/RCompile/recent/R-4.4.0/include -D_FILE_OFFSET_BITS=64 cheapcgi.c -o cheapcgi.o
gcc -c -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fpic -ID:/RCompile/recent/R-4.4.0/include -D_FILE_OFFSET_BITS=64 linefile.c -o linefile.o
gcc -c -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fpic -ID:/RCompile/recent/R-4.4.0/include -D_FILE_OFFSET_BITS=64 obscure.c -o obscure.o
gcc -c -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fpic -ID:/RCompile/recent/R-4.4.0/include -D_FILE_OFFSET_BITS=64 dnautil.c -o dnautil.o
gcc -c -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fpic -ID:/RCompile/recent/R-4.4.0/include -D_FILE_OFFSET_BITS=64 dnaseq.c -o dnaseq.o
gcc -c -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fpic -ID:/RCompile/recent/R-4.4.0/include -D_FILE_OFFSET_BITS=64 twoBit.c -o twoBit.o
ar -rc libtwobit.a common.o localmem.o errAbort.o hash.o bits.o cheapcgi.o linefile.o obscure.o dnautil.o dnaseq.o twoBit.o
ranlib libtwobit.a
## We will need -lcrypto only if we decide to support the
## twoBitOpenExternalBptIndex functionality. See NOTES.txt in this
## folder and Rtwobitlib/inst/unused_but_kept_just_in_case/README.txt
## for more information.
#gcc -shared -LD:/RCompile/recent/R-4.4.0/bin/x64 -o libtwobit.so common.o localmem.o errAbort.o hash.o bits.o cheapcgi.o linefile.o obscure.o dnautil.o dnaseq.o twoBit.o -lcrypto -lR
gcc -shared -LD:/RCompile/recent/R-4.4.0/bin/x64 -o libtwobit.so common.o localmem.o errAbort.o hash.o bits.o cheapcgi.o linefile.o obscure.o dnautil.o dnaseq.o twoBit.o -lR
make[2]: Leaving directory '/d/temp/RtmpKAm3yO/R.INSTALL4fa85cd4c6a/Rtwobitlib/src/kent'
mkdir -p "d:/Rcompile/CRANpkg/lib/4.4/00LOCK-Rtwobitlib/00new/Rtwobitlib/include/kent"
cd "kent" && cp *.h "d:/Rcompile/CRANpkg/lib/4.4/00LOCK-Rtwobitlib/00new/Rtwobitlib/include/kent"
gcc  -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"d:/Rcompile/CRANpkg/lib/4.4/00LOCK-Rtwobitlib/00new/Rtwobitlib/include"    -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c R_init_Rtwobitlib.c -o R_init_Rtwobitlib.o
gcc  -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"d:/Rcompile/CRANpkg/lib/4.4/00LOCK-Rtwobitlib/00new/Rtwobitlib/include"    -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rtwobitlib_utils.c -o Rtwobitlib_utils.o
gcc  -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"d:/Rcompile/CRANpkg/lib/4.4/00LOCK-Rtwobitlib/00new/Rtwobitlib/include"    -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c twobit_roundtrip.c -o twobit_roundtrip.o
gcc  -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"d:/Rcompile/CRANpkg/lib/4.4/00LOCK-Rtwobitlib/00new/Rtwobitlib/include"    -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c twobit_seqstats.c -o twobit_seqstats.o
mkdir -p "d:/Rcompile/CRANpkg/lib/4.4/00LOCK-Rtwobitlib/00new/Rtwobitlib/usrlib/x64"
cd "kent" && cp libtwobit.a "d:/Rcompile/CRANpkg/lib/4.4/00LOCK-Rtwobitlib/00new/Rtwobitlib/usrlib/x64"
gcc -shared -s -static-libgcc -o Rtwobitlib.dll tmp.def R_init_Rtwobitlib.o Rtwobitlib_utils.o twobit_roundtrip.o twobit_seqstats.o d:/Rcompile/CRANpkg/lib/4.4/00LOCK-Rtwobitlib/00new/Rtwobitlib/usrlib/x64/libtwobit.a -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.0/bin/x64 -lR
make[1]: Leaving directory '/d/temp/RtmpKAm3yO/R.INSTALL4fa85cd4c6a/Rtwobitlib/src'
make[1]: Entering directory '/d/temp/RtmpKAm3yO/R.INSTALL4fa85cd4c6a/Rtwobitlib/src'
cd "kent" && make -f "Makefile.Rtwobitlib.win"
make[2]: Entering directory '/d/temp/RtmpKAm3yO/R.INSTALL4fa85cd4c6a/Rtwobitlib/src/kent'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/d/temp/RtmpKAm3yO/R.INSTALL4fa85cd4c6a/Rtwobitlib/src/kent'
mkdir -p "d:/Rcompile/CRANpkg/lib/4.4/00LOCK-Rtwobitlib/00new/Rtwobitlib/include/kent"
cd "kent" && cp *.h "d:/Rcompile/CRANpkg/lib/4.4/00LOCK-Rtwobitlib/00new/Rtwobitlib/include/kent"
gcc  -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"d:/Rcompile/CRANpkg/lib/4.4/00LOCK-Rtwobitlib/00new/Rtwobitlib/include"    -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c R_init_Rtwobitlib.c -o R_init_Rtwobitlib.o
gcc  -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"d:/Rcompile/CRANpkg/lib/4.4/00LOCK-Rtwobitlib/00new/Rtwobitlib/include"    -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Rtwobitlib_utils.c -o Rtwobitlib_utils.o
gcc  -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"d:/Rcompile/CRANpkg/lib/4.4/00LOCK-Rtwobitlib/00new/Rtwobitlib/include"    -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c twobit_roundtrip.c -o twobit_roundtrip.o
gcc  -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I"d:/Rcompile/CRANpkg/lib/4.4/00LOCK-Rtwobitlib/00new/Rtwobitlib/include"    -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c twobit_seqstats.c -o twobit_seqstats.o
make[1]: Leaving directory '/d/temp/RtmpKAm3yO/R.INSTALL4fa85cd4c6a/Rtwobitlib/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-Rtwobitlib/00new/Rtwobitlib/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'Rtwobitlib' as Rtwobitlib_0.3.6.zip
* DONE (Rtwobitlib)