* installing *source* package 'CASMAP' ... ** package 'CASMAP' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: 'g++.exe (GCC) 13.2.0' using C++11 make[1]: Entering directory '/d/temp/RtmpYRlMbG/R.INSTALL274685520551c/CASMAP/src' g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ArrayFile.cpp -o ArrayFile.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CumulativeTimeMeasurement.cpp -o CumulativeTimeMeasurement.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Exception.cpp -o Exception.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c FeatureSet.cpp -o FeatureSet.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c FilterIntervals.cpp -o FilterIntervals.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Genotype.cpp -o Genotype.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c PValues.cpp -o PValues.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Phenotype.cpp -o Phenotype.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Profiler.cpp -o Profiler.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SignificantFeaturesSearch.cpp -o SignificantFeaturesSearch.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SignificantFeaturesSearchTaroneCmh.cpp -o SignificantFeaturesSearchTaroneCmh.o SignificantFeaturesSearchTaroneCmh.cpp: In member function 'virtual void SignificantPattern::SignificantFeaturesSearchTaroneCmh::freq_destructor()': SignificantFeaturesSearchTaroneCmh.cpp:104:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 104 | if (freq_par_cov[0]) delete [] freq_par_cov[0]; freq_par_cov[0] = 0; | ^~ SignificantFeaturesSearchTaroneCmh.cpp:104:57: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 104 | if (freq_par_cov[0]) delete [] freq_par_cov[0]; freq_par_cov[0] = 0; | ^~~~~~~~~~~~ g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SignificantFeaturesSearchWithCovariates.cpp -o SignificantFeaturesSearchWithCovariates.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SignificantIntervalSearch.cpp -o SignificantIntervalSearch.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SignificantIntervalSearchChi.cpp -o SignificantIntervalSearchChi.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SignificantIntervalSearchExact.cpp -o SignificantIntervalSearchExact.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SignificantIntervalSearchFais.cpp -o SignificantIntervalSearchFais.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SignificantIntervalSearchFastCmh.cpp -o SignificantIntervalSearchFastCmh.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SignificantItemsetSearch.cpp -o SignificantItemsetSearch.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SignificantItemsetSearchFacs.cpp -o SignificantItemsetSearchFacs.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Summary.cpp -o Summary.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c TransactionsData.cpp -o TransactionsData.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c double_comp.cpp -o double_comp.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gamma.cpp -o gamma.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pval.cpp -o pval.o g++ -std=gnu++11 -I"D:/RCompile/recent/R-4.4.0/include" -DNDEBUG -I../inst/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sigpatsearch.cpp -o sigpatsearch.o g++ -shared -s -static-libgcc -o CASMAP.dll tmp.def ArrayFile.o CumulativeTimeMeasurement.o Exception.o FeatureSet.o FilterIntervals.o Genotype.o PValues.o Phenotype.o Profiler.o RcppExports.o SignificantFeaturesSearch.o SignificantFeaturesSearchTaroneCmh.o SignificantFeaturesSearchWithCovariates.o SignificantIntervalSearch.o SignificantIntervalSearchChi.o SignificantIntervalSearchExact.o SignificantIntervalSearchFais.o SignificantIntervalSearchFastCmh.o SignificantItemsetSearch.o SignificantItemsetSearchFacs.o Summary.o TransactionsData.o double_comp.o gamma.o pval.o sigpatsearch.o -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.0/bin/x64 -lR make[1]: Leaving directory '/d/temp/RtmpYRlMbG/R.INSTALL274685520551c/CASMAP/src' make[1]: Entering directory '/d/temp/RtmpYRlMbG/R.INSTALL274685520551c/CASMAP/src' make[1]: Leaving directory '/d/temp/RtmpYRlMbG/R.INSTALL274685520551c/CASMAP/src' installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-CASMAP/00new/CASMAP/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'CASMAP' as CASMAP_0.6.1.zip * DONE (CASMAP)