* installing *source* package 'BGLR' ...
** this is package 'BGLR' version '1.1.4'
** package 'BGLR' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 14.2.0'
make[1]: Entering directory '/d/temp/2025_10_26_01_50_00_14777/Rtmp4GABxj/R.INSTALL2a58620b3534/BGLR/src'
gcc  -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG     -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -I.   -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c util_sample.c -o util_sample.o
gcc  -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG     -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -I.   -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c util_plink.c -o util_plink.o
util_plink.c: In function 'read_string':
util_plink.c:39:25: warning: pointer 'buffer' may be used after 'realloc' [-Wuse-after-free]
   39 |                         free(buffer);
      |                         ^~~~~~~~~~~~
util_plink.c:36:43: note: call to 'realloc' here
   36 |                      char *tmp = (char *) realloc(buffer, buf_size);
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~
util_plink.c: In function 'read_ped_':
util_plink.c:190:23: warning: 'Line_copy' may be used uninitialized [-Wmaybe-uninitialized]
  190 |                 token=strtok(Line_copy,"\t ");
      |                       ^~~~~~~~~~~~~~~~~~~~~~~
util_plink.c:105:15: note: 'Line_copy' was declared here
  105 |         char *Line_copy;
      |               ^~~~~~~~~
util_plink.c:263:17: warning: 'Line' may be used uninitialized [-Wmaybe-uninitialized]
  263 |                 free(Line);
      |                 ^~~~~~~~~~
util_plink.c:104:15: note: 'Line' was declared here
  104 |         char *Line;
      |               ^~~~
util_plink.c:229:51: warning: 'tmp' may be used uninitialized [-Wmaybe-uninitialized]
  229 |                                                 if(tmp=='0' && token[0]=='0')
      |                                                   ^
util_plink.c:114:14: note: 'tmp' was declared here
  114 |         char tmp;
      |              ^~~
gcc  -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG     -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -I.   -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c util_sample_cross.c -o util_sample_cross.o
gcc  -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG     -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -I.   -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c sampler_multitrait.c -o sampler_multitrait.o
gcc  -I"D:/RCompile/recent/R-4.5.1/include" -DNDEBUG     -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"   -I.   -pedantic -Wstrict-prototypes -O2 -Wall -std=gnu2x  -mfpmath=sse -msse2 -mstackrealign   -c init.c -o init.o
gcc -shared -s -static-libgcc -o BGLR.dll tmp.def util_sample.o util_plink.o util_sample_cross.o sampler_multitrait.o init.o -LD:/RCompile/recent/R-4.5.1/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.5.1/bin/x64 -lRblas -lgfortran -lquadmath -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.5.1/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_10_26_01_50_00_14777/Rtmp4GABxj/R.INSTALL2a58620b3534/BGLR/src'
make[1]: Entering directory '/d/temp/2025_10_26_01_50_00_14777/Rtmp4GABxj/R.INSTALL2a58620b3534/BGLR/src'
make[1]: Leaving directory '/d/temp/2025_10_26_01_50_00_14777/Rtmp4GABxj/R.INSTALL2a58620b3534/BGLR/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-BGLR/00new/BGLR/libs/x64
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'BGLR' as BGLR_1.1.4.zip
* DONE (BGLR)