- using R version 2.10.0 (2009-10-26)
- using session charset: ISO8859-1
- checking for file 'asuR/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'asuR' version '0.08-24'
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking whether package 'asuR' can be installed ... WARNING
Found the following significant warnings:
Warning: ./man/colVars.Rd:28: unexpected '}'
Warning: ./man/growth.Rd:22: unexpected '}'
Warning: ./man/inspect.Rd:28: unexpected section header '\description'
Warning: ./man/inspect.Rd:29: unknown macro '\item'
Warning: ./man/inspect.Rd:33: unknown macro '\item'
Warning: ./man/inspect.Rd:37: unknown macro '\item'
Warning: ./man/mytrees.Rd:18: unexpected '}'
Warning: ./man/pea.Rd:20: unexpected '}'
Warning: ./man/wellplate.Rd:34: unexpected '}'
See http://www.r-project.org/nosvn/R.check/r-release-windows-ix86/asuR-00install.html for details.
- checking package directory ... OK
- checking for portable file names ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
dep.glm: no visible binding for global variable 'my.data'
lep.glm: no visible binding for global variable 'response.values'
lep.glm: no visible binding for global variable 'my.data'
nep.lmer: no visible binding for global variable 'my.data'
nrp.lmer: no visible binding for global variable 'fixed.terms.factor'
nrp.lmer: no visible binding for global variable 'my.data'
parseFormula.glm: no visible binding for '<<-' assignment to
'response.var'
parseFormula.glm: no visible binding for '<<-' assignment to
'response.term'
parseFormula.glm: no visible binding for '<<-' assignment to
'predict.vars.numeric'
parseFormula.glm: no visible binding for '<<-' assignment to
'predict.terms.numeric'
parseFormula.glm: no visible binding for '<<-' assignment to
'index_coef.terms.numeric'
parseFormula.glm: no visible binding for global variable
'predict.terms.numeric'
parseFormula.glm: no visible binding for '<<-' assignment to 'my.data'
parseFormula.glm: no visible binding for global variable 'response.var'
parseFormula.glm: no visible binding for '<<-' assignment to
'intercept.logical'
parseFormula.lm: no visible binding for '<<-' assignment to
'terms.numeric'
parseFormula.lm: no visible binding for '<<-' assignment to
'response.var'
parseFormula.lm: no visible binding for '<<-' assignment to
'response.term'
parseFormula.lm: no visible binding for '<<-' assignment to
'predict.vars.numeric'
parseFormula.lm: no visible binding for '<<-' assignment to
'predict.terms.numeric'
parseFormula.lm: no visible binding for global variable 'terms.numeric'
parseFormula.lm: no visible binding for '<<-' assignment to
'my.data.glm'
parseFormula.lm: no visible binding for global variable 'response.var'
parseFormula.lm: no visible binding for '<<-' assignment to
'intercept.logical'
parseFormula.lmer: no visible binding for '<<-' assignment to
'intercept.logical'
parseFormula.lmer: no visible binding for '<<-' assignment to
'group.vars'
parseFormula.lmer: no visible binding for '<<-' assignment to
'effect.vars'
parseFormula.lmer: no visible binding for '<<-' assignment to
'fixed.terms.numeric'
parseFormula.lmer: no visible binding for '<<-' assignment to
'fixed.terms.factor'
rfp.lmer: no visible binding for global variable 'my.data'
rfp.lmer: no visible binding for global variable 'fixed.terms.factor'
rgp.lmer: no visible binding for global variable 'my.data'
rgp.lmer: no visible binding for global variable 'rand.vars'
rpp.glm: no visible binding for global variable 'my.data'
rpp.glm: no visible binding for global variable 'predict.terms.numeric'
rpp.glm: no visible binding for global variable 'response.values'
rpp.lm: no visible binding for global variable 'predict.vars.numeric'
rpp.lm: no visible binding for global variable 'response.values.lm'
dep,glm: no visible binding for global variable 'my.data'
lep,glm: no visible binding for global variable 'response.values'
lep,glm: no visible binding for global variable 'my.data'
nep,lmer: no visible binding for global variable 'my.data'
nrp,lmer: no visible binding for global variable 'fixed.terms.factor'
nrp,lmer: no visible binding for global variable 'my.data'
parseFormula,glm: no visible binding for '<<-' assignment to
'response.var'
parseFormula,glm: no visible binding for '<<-' assignment to
'response.term'
parseFormula,glm: no visible binding for '<<-' assignment to
'predict.vars.numeric'
parseFormula,glm: no visible binding for '<<-' assignment to
'predict.terms.numeric'
parseFormula,glm: no visible binding for '<<-' assignment to
'index_coef.terms.numeric'
parseFormula,glm: no visible binding for global variable
'predict.terms.numeric'
parseFormula,glm: no visible binding for '<<-' assignment to 'my.data'
parseFormula,glm: no visible binding for global variable 'response.var'
parseFormula,glm: no visible binding for '<<-' assignment to
'intercept.logical'
parseFormula,lm: no visible binding for '<<-' assignment to
'terms.numeric'
parseFormula,lm: no visible binding for '<<-' assignment to
'response.var'
parseFormula,lm: no visible binding for '<<-' assignment to
'response.term'
parseFormula,lm: no visible binding for '<<-' assignment to
'predict.vars.numeric'
parseFormula,lm: no visible binding for '<<-' assignment to
'predict.terms.numeric'
parseFormula,lm: no visible binding for global variable 'terms.numeric'
parseFormula,lm: no visible binding for '<<-' assignment to
'my.data.glm'
parseFormula,lm: no visible binding for global variable 'response.var'
parseFormula,lm: no visible binding for '<<-' assignment to
'intercept.logical'
parseFormula,lmer: no visible binding for '<<-' assignment to
'intercept.logical'
parseFormula,lmer: no visible binding for '<<-' assignment to
'group.vars'
parseFormula,lmer: no visible binding for '<<-' assignment to
'effect.vars'
parseFormula,lmer: no visible binding for '<<-' assignment to
'fixed.terms.numeric'
parseFormula,lmer: no visible binding for '<<-' assignment to
'fixed.terms.factor'
rfp,lmer: no visible binding for global variable 'my.data'
rfp,lmer: no visible binding for global variable 'fixed.terms.factor'
rgp,lmer: no visible binding for global variable 'my.data'
rgp,lmer: no visible binding for global variable 'rand.vars'
rpp,glm: no visible binding for global variable 'my.data'
rpp,glm: no visible binding for global variable 'predict.terms.numeric'
rpp,glm: no visible binding for global variable 'response.values'
rpp,lm: no visible binding for global variable 'predict.vars.numeric'
rpp,lm: no visible binding for global variable 'response.values.lm'
- checking Rd files ... WARNING
prepare_Rd: colVars.Rd:28: unexpected '}'
prepare_Rd: growth.Rd:22: unexpected '}'
prepare_Rd: identifyControl.Rd:16-17: Dropping empty section \details
prepare_Rd: inspect.Rd:28: unexpected section header '\description'
prepare_Rd: inspect.Rd:29: unknown macro '\item'
prepare_Rd: inspect.Rd:33: unknown macro '\item'
prepare_Rd: inspect.Rd:37: unknown macro '\item'
prepare_Rd: mytrees.Rd:18: unexpected '}'
prepare_Rd: parseFormula.glm.Rd:14-15: Dropping empty section \details
prepare_Rd: parseFormula.glm.Rd:16-18: Dropping empty section \value
prepare_Rd: parseFormula.lm.Rd:14-15: Dropping empty section \details
prepare_Rd: parseFormula.lmer.Rd:14-15: Dropping empty section \details
prepare_Rd: parseFormula.lmer.Rd:16-18: Dropping empty section \value
prepare_Rd: pea.Rd:20: unexpected '}'
prepare_Rd: wellplate.Rd:34: unexpected '}'
- checking Rd metadata ... WARNING
Rd files with duplicated name 'parseFormula':
parseFormula.Rd parseFormula.lm.Rd
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking data for non-ASCII characters ... OK
- checking examples ... OK
- checking package vignettes in 'inst/doc' ... NOTE
*** PDFLaTeX Errors ***
File d:/Rcompile/CRANpkg/local/2.10/asuR.Rcheck/inst/doc/coursenotes.Rnw :
running 'texi2dvi' on 'coursenotes.tex' failed
LaTeX errors:
! LaTeX Error: File `mySlides.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
- checking PDF version of manual ... OK