• using R version 2.9.1 (2009-06-26)
• using session charset: ISO8859-1
• checking for file 'Geneland/DESCRIPTION' ... OK
• this is package 'Geneland' version '3.1.4'
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking whether package 'Geneland' can be installed ... WARNING
  Found the following significant warnings:
  Warning: invalid whitespace before brace in file 'PlotFreq.Rd' at ' \item{ipop} {Integer number : index of population}'
  Warning: invalid whitespace before brace in file 'PlotFreq.Rd' at ' \item{ipop} {Integer number : index of population}'
  See http://www.r-project.org/nosvn/R.check/r-release-windows-ix86/Geneland-00install.html for details.
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  Geneland.GUI : run : RunmcmcFmodel: no visible binding for '<<-'
  assignment to 'probs'
  Geneland.GUI : run : RunmcmcFmodel: no visible binding for '<<-'
  assignment to 'pops'
  Geneland.GUI : run : RunmcmcFmodel: no visible binding for '<<-'
  assignment to 'runs'
  Geneland.GUI : run : RunmcmcFmodel : Sort: no visible binding for
  global variable 'probs'
  Geneland.GUI : run : RunmcmcFmodel : Sort: no visible binding for
  global variable 'pops'
  Geneland.GUI : run : RunmcmcFmodel : Sort: no visible binding for
  global variable 'runs'
  Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
  '<<-' assignment to 'probs'
  Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
  '<<-' assignment to 'pops'
  Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
  '<<-' assignment to 'runs'
  Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
  global variable 'runs'
  Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
  global variable 'pops'
  Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
  global variable 'probs'
  Geneland.GUI : run : RunmcmcFmodel : Output: no visible binding for
  global variable 'runs'
  Geneland.GUI : run : RunmcmcFmodel : mr: no visible binding for '<<-'
  assignment to 'pops'
  Geneland.GUI : run : RunmcmcFmodel : mr: no visible binding for global
  variable 'pops'
  Geneland.GUI : run : RunmcmcFmodel : mr: no visible binding for '<<-'
  assignment to 'probs'
  Geneland.GUI : run : RunmcmcFmodel : mr: no visible binding for global
  variable 'probs'
  Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
  '<<-' assignment to 'runs'
  Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
  global variable 'runs'
  Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
  '<<-' assignment to 'pops'
  Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
  global variable 'pops'
  Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
  '<<-' assignment to 'probs'
  Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
  global variable 'probs'
  PostProcessChain: no visible binding for global variable 'spatial'
• checking Rd files ... OK
• checking Rd files against version 2 parser ... WARNING
  *** error on file ./man/MCMC.Rd
  Error : ./man/MCMC.Rd:173: Unrecognized macro \item
  
  Warning in parse_Rd("./man/PlotFreq.Rd", encoding = "unknown") :
  bad markup (extra space?) at PlotFreq.Rd:18:15
  Warning: ./man/PlotFreq.Rd:18: Unnecessary braces at '{Integer number : index of population}'
  Warning: ./man/simFmodel.Rd:38: Unnecessary braces at '{1, \code{npop}}'
  problem found in 'MCMC.Rd'
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking data for non-ASCII characters ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $BLAS_LIBS ... OK
• checking examples ... OK
• checking PDF version of manual ... OK