• using R version 3.0.1 (2013-05-16)
• using platform: x86_64-w64-mingw32 (64-bit)
• using session charset: ISO8859-1
• checking for file 'trimcluster/DESCRIPTION' ... OK
• this is package 'trimcluster' version '0.1-2'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'trimcluster' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... OK
• checking for unstated dependencies in tests ... OK
• checking tests ... OK
  Running 'examples.R'
  Comparing 'examples.Rout' to 'examples.Rout.save' ...25,27c25,27
  < trmkmn+ ii <-ii+1
  < trmkmn+ X[ii,] <- c(5,-5)+rnorm(2)
  < trmkmn+ }
  ---
  > ii <- ii + 1
  > X[ii, ] <- c(5, -5) + rnorm(2)
  > }
  30,32c30,32
  < trmkmn+ ii <- ii+1
  < trmkmn+ X[ii,] <- c(5,5)+rnorm(2)*0.75
  < trmkmn+ }
  ---
  > ii <- ii + 1
  > X[ii, ] <- c(5, 5) + rnorm(2) * 0.75
  > }
  35,37c35,37
  < trmkmn+ ii <- ii+1
  < trmkmn+ X[ii,] <- c(-5,-5)+rnorm(2)*0.75
  < trmkmn+ }
  ---
  > ii <- ii + 1
  > X[ii, ] <- c(-5, -5) + rnorm(2) * 0.75
  > }
  40,42c40,42
  < trmkmn+ ii <- ii+1
  < trmkmn+ X[ii,] <- rnorm(2)*8
  < trmkmn+ }
  ---
  > ii <- ii + 1
  > X[ii, ] <- rnorm(2) * 8
  > }
  46d45
  < trmkmn> # runs=3 is used to save computing time.
• checking PDF version of manual ... OK