• using R version 2.15.0 (2012-03-30)
  • using platform: x86_64-pc-mingw32 (64-bit)
  • using session charset: ISO8859-1
  • checking for file 'pbatR/DESCRIPTION' ... OK
  • this is package 'pbatR' version '2.2-3'
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking whether package 'pbatR' can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • loading checks for arch 'i386'
    ** checking whether the package can be loaded ... OK
    ** checking whether the package can be loaded with stated dependencies ... OK
    ** checking whether the package can be unloaded cleanly ... OK
    ** checking whether the namespace can be loaded with stated dependencies ... OK
    ** checking whether the namespace can be unloaded cleanly ... OK
  • loading checks for arch 'x64'
    ** checking whether the package can be loaded ... OK
    ** checking whether the package can be loaded with stated dependencies ... OK
    ** checking whether the package can be unloaded cleanly ... OK
    ** checking whether the namespace can be loaded with stated dependencies ... OK
    ** checking whether the namespace can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    File 'pbatR/R/metadata.R':
    .onLoad calls:
    cat("##############################\n")
    cat("# The current pbatR mode is:\n")
    cat("# PBAT executable:", m$executable, "\n")
    cat("# (wine is not being used)\n")
    cat("# wine location:", m$wine, "\n")
    cat("# mode:", m$mode, "\n")
    cat("# jobs:", m$jobs, "\n")
    cat("# cluster command:", m$cluster, "\n")
    cat("# cluster refresh:", m$refresh, "\n")
    cat("##############################\n")
    cat("Warning: Version checking is turned off. Issue the command:\n")
    cat(" pbat.setVersionCheck()\n")
    cat("to turn version checking back on.\n")

    Package startup functions should use 'packageStartupMessage' to
    generate messages.
    See section 'Good practice' in ?.onAttach.
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
  • checking compiled code ... NOTE
    File 'd:/Rcompile/CRANpkg/lib/2.15/pbatR/libs/i386/pbatR.dll':
    Found '_ZSt4cerr', possibly from 'std::cerr' (C++)
    Object: 'wait.o'
    Found '_ZSt4cout', possibly from 'std::cout' (C++)
    Objects: 'data.o', 'fbatDist.o', 'kludge.o', 'powerSim.o',
    'sh2win.o'
    File 'd:/Rcompile/CRANpkg/lib/2.15/pbatR/libs/x64/pbatR.dll':
    Found '_ZSt4cerr', possibly from 'std::cerr' (C++)
    Object: 'wait.o'
    Found '_ZSt4cout', possibly from 'std::cout' (C++)
    Objects: 'data.o', 'fbatDist.o', 'kludge.o', 'powerSim.o',
    'sh2win.o'

    Compiled code should not call functions which might terminate R nor
    write to stdout/stderr instead of to the console.

    See 'Writing portable packages' in the 'Writing R Extensions' manual.
  • checking examples ...
    ** running examples for arch 'i386' ... OK
    ** running examples for arch 'x64' ... OK
  • checking PDF version of manual ... OK
    NOTE: There were 2 notes.
    See
    'd:/Rcompile/CRANpkg/local/2.15/pbatR.Rcheck/00check.log'
    for details.