- using R version 2.15.0 (2012-03-30)
- using platform: x86_64-pc-mingw32 (64-bit)
- using session charset: ISO8859-1
- checking for file 'mvbutils/DESCRIPTION' ... OK
- this is package 'mvbutils' version '2.5.101'
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking whether package 'mvbutils' can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
- loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
Found the following possibly unsafe calls:
File 'R/mvbutils.R':
found unlockBinding(obj, env)
found unlockBinding(x, envir)
found unlockBinding(x, impenv)
%where.warn%: warning in deparse(substitute(cond), nlines = 1, width =
50): partial argument match of 'width' to 'width.cutoff'
%where.warn%: warning in deparse(substitute(x), nlines = 1, width =
20): partial argument match of 'width' to 'width.cutoff'
.Last.lib: warning in ls(s, patt = "^base\\."): partial argument match
of 'patt' to 'pattern'
.onLoad: warning in evalq({: partial argument match of 'env' to 'envir'
.onLoad: warning in maintained.packages <- originals.mp <-
dont.lock.envs <- presave.hooks <- list(): partial argument match of
'env' to 'envir'
.onLoad: warning in fix.list <- empty.data.frame(name = , file = ,
where = , where.type = , dataclass = "", has.source = FALSE,
file.time = 0): partial argument match of 'env' to 'envir'
.onLoad: warning in dont.lock.envnames <- character(0): partial
argument match of 'env' to 'envir'
.onLoad: warning in }, env = nsenv): partial argument match of 'env' to
'envir'
.onLoad : f: no visible binding for global variable 'blah'
.onLoad: no visible binding for global variable 'package'
.onLoad: no visible binding for global variable 'tasks'
.onLoad: no visible binding for global variable 'ROOT'
.onLoad: no visible binding for global variable 'mvbutils'
.onLoad: no visible binding for global variable 'head.default'
.onLoad: no visible binding for global variable 'tail.default'
FF: no visible binding for global variable 'w'
FF: no visible binding for global variable 'mods.in.packages'
FF: no visible binding for global variable 'mods.in.tasks'
FF: no visible binding for global variable 'tracees'
FF: no visible binding for global variable 'mtrace'
Save.pos: no visible global function definition for 'warn'
Save.pos: no visible global function definition for 'check.for.tracees'
Save.pos: no visible binding for global variable 'tracees'
Save.pos: no visible binding for global variable 'mtrace'
autoedit: warning in exists("autoedit.callback", env = s, inherits =
FALSE): partial argument match of 'env' to 'envir'
autoedit: warning in assign("autoedit.callback",
addTaskCallback(function(...) {: partial argument match of 'env' to
'envir'
autoedit: warning in try(FF()): partial argument match of 'env' to
'envir'
autoedit: warning in TRUE: partial argument match of 'env' to 'envir'
autoedit: warning in }), env = s): partial argument match of 'env' to
'envir'
called.by: warning in unlist(lapply(where, exists, x = fname), use =
FALSE): partial argument match of 'use' to 'use.names'
cd: no visible binding for global variable 'last.warning'
cd: no visible binding for global variable '.Traceback'
cd: no visible binding for global variable '.Saved.plots'
cd: no visible binding for global variable '.'
cd: warning in load.mvb(file.path(orig.path, ".RData"),
names(orig.path), pos = 2, attach = TRUE, path = orig.path): partial
argument match of 'attach' to 'attach.new'
cd..: no visible binding for global variable 'execute.Last'
cd..: no visible binding for global variable 'orig.path'
cd.load: warning in save.refdb(file = filename, env =
maintained.packages[[taskname]]): partial argument match of 'env' to
'envir'
cd.load: no visible binding for global variable '.'
cd.load: no visible binding for global variable 'execute.First'
cd.write.mvb.tasks: no visible binding for global variable '.'
cd.write.mvb.tasks.guts: warning in exists("tasks", env = env, inherits
= FALSE): partial argument match of 'env' to 'envir'
cdfind: no visible binding for global variable '.'
cditerate: warning in assign("[[", my.index, env =
sys.frame(sys.nframe())): partial argument match of 'env' to 'envir'
cditerate: warning in assign("[[<-", my.index.assign, env =
sys.frame(sys.nframe())): partial argument match of 'env' to 'envir'
cditerate: warning in exists.mvb("tasks", env = env): partial argument
match of 'env' to 'envir'
cditerate: warning in get("tasks", env = env): partial argument match
of 'env' to 'envir'
cdregexpr: no visible binding for global variable '.'
cdtree: no visible binding for global variable '.'
cdtree: no visible binding for global variable 'x'
check.pkg: no visible binding for global variable 'subdir'
copy.ns.objects : icns : f: no visible binding for global variable
'blah'
create.backups: no visible binding for global variable '.'
deal.with.backups: no visible global function definition for 'warn'
demlazy: no visible binding for global variable '.'
discard.mouldering.backups: no visible binding for global variable
'backup.fix'
doc2Rd: no visible binding for global variable '.'
doc2Rd: no visible binding for global variable 'docType'
doc2Rd: no visible binding for global variable 'author'
dont.save: no visible binding for global variable '.SavedPlots'
dont.save: no visible binding for global variable 'last.warning'
dont.save: no visible binding for global variable '.Traceback'
expand.match: warning in pmatch(toupper(short), toupper(long), dup =
TRUE): partial argument match of 'dup' to 'duplicates.ok'
expand.match: warning in pmatch(short, long, dup = TRUE): partial
argument match of 'dup' to 'duplicates.ok'
find.and.get: no visible binding for global variable 'name'
find.and.get: no visible binding for global variable 'fixing'
find.and.get: no visible binding for global variable 'tracees'
find.and.get: no visible binding for global variable 'what'
find.derefs: no visible binding for global variable '.'
find.docholder: no visible binding for global variable 'funs'
find.documented : findo: no visible binding for global variable '.'
find.funs: warning in unlist(lapply(pos, findo), use = FALSE): partial
argument match of 'use' to 'use.names'
find.path : get.tasks.if.present: warning in exists.mvb("tasks", env =
env.or.pos): partial argument match of 'env' to 'envir'
find.path : get.tasks.if.present: warning in get("tasks", env =
env.or.pos): partial argument match of 'env' to 'envir'
find.path: warning in objects(env = env, all = TRUE): partial argument
match of 'env' to 'envir'
find.path: warning in objects(env = env, all = TRUE): partial argument
match of 'all' to 'all.names'
find.web: no visible binding for global variable 'generics'
find.web: no visible binding for global variable 'where'
find.web: no visible binding for global variable 'textcolor'
find.web: no visible binding for global variable 'prune'
find.web: no visible binding for global variable 'highlight'
fixr: warning in deparse(substitute(x), width = 30, nlines = 1):
partial argument match of 'width' to 'width.cutoff'
fixr: no visible binding for global variable 'load.from'
fixr: no visible binding for global variable 'name.load.from'
fixr: no visible binding for global variable 'trace.was.on'
fixr: no visible global function definition for 'mtrace'
fixr: no visible binding for global variable 'type.load.from'
fixr: no visible binding for global variable 'package'
fixr: no visible binding for global variable 'task'
fixr.guts: no visible binding for global variable 'tracees'
fixr.guts: no visible global function definition for 'mtrace'
fixup.DLLs: warning in dir(rpath, patt = suffix): partial argument
match of 'patt' to 'pattern'
fixup.DLLs: warning in dir(file.path(rpath, "inst", libs), patt =
suffix): partial argument match of 'patt' to 'pattern'
fixup.DLLs: warning in dir(ipath.libs, patt = suffix): partial argument
match of 'patt' to 'pattern'
fixup.DLLs: warning in dir(file.path(rpath, "src"), patt =
"[.](c|cc|cpp|C|f|f90|f95|m|mm|M)$"): partial argument match of
'patt' to 'pattern'
fixup.exports: no visible binding for global variable '.'
fixup.help: no visible binding for global variable 'spath'
fixup.help: warning in dir(manpath, patt = "[.]Rd$"): partial argument
match of 'patt' to 'pattern'
fixup.help: no visible binding for global variable 'ipath'
fixup.help: no visible binding for global variable 'force.all.docs'
fixup.help: no visible binding for global variable 'dynamic.help'
fixup.help: no visible binding for global variable 'pkg'
fixup.help: no visible binding for global variable 'is.Rd2'
foodweb: no visible binding for global variable 'level'
foodweb: no visible binding for global variable 'funmat'
foodweb: no visible binding for global variable 'x'
generic.dll.loader: warning in dir(dll.path, pattern = this.ext, full =
FALSE, ignore.case = .Platform$OS.type == "windows"): partial
argument match of 'full' to 'full.names'
get.new.file.numbers: no visible binding for global variable '.'
help2flatdoc: no visible binding for global variable '.'
help2flatdoc: no visible binding for global variable 'USAGE'
help2flatdoc: no visible binding for global variable 'EXAMPLES'
hook.set.already: no visible binding for global variable 'prepend'
internal.copy.ns.objects : f: no visible binding for global variable
'blah'
load.live.package: no visible binding for '<<-' assignment to
'live.packages'
load.live.package: no visible binding for global variable
'live.packages'
load.maintained.package: no visible binding for global variable
'mvb.session.info'
load.mvb: warning in load.refdb(filename, env = envir, fpath = path):
partial argument match of 'env' to 'envir'
make.NAMESPACE : <anonymous>: warning in get(x, env = env): partial
argument match of 'env' to 'envir'
make.NAMESPACE: no visible binding for global variable '.'
methodize.USAGE: no visible binding for global variable 'overall.name'
mlazy: no visible binding for global variable '.'
mlibrary2: no visible binding for global variable 'tasks'
mlocal: warning in exists.mvb(i, env = nlocal.env): partial argument
match of 'env' to 'envir'
mlocal: no visible binding for global variable 'override.answer'
move: warning in find.path(char = to): partial argument match of 'char'
to 'char.rel.path'
move: warning in find.path(char = from): partial argument match of
'char' to 'char.rel.path'
move: no visible binding for global variable '.'
move: warning in get(i, env = from$env): partial argument match of
'env' to 'envir'
move.fix.list: no visible binding for global variable 'what'
move.fix.list: no visible binding for global variable 'to'
move.to.mcache: no visible binding for global variable '.'
mp.synch: no visible binding for global variable 'exports.have.changed'
mtidy: no visible binding for global variable '.'
mupdate.mcache: no visible binding for global variable '.'
mvb.sys.on.exit: no visible global function definition for
'find.debug.HQ'
not.for.packaging: no visible binding for global variable 'tasks'
not.for.packaging: no visible binding for global variable '.Traceback'
not.for.packaging: no visible binding for global variable
'last.warning'
not.for.packaging: no visible binding for global variable '.SavedPlots'
organize.web.display: no visible binding for global variable 'n'
organize.web.display: no visible binding for global variable 'funs'
organize.web.display: no visible binding for global variable 'funmat'
organize.web.display: no visible binding for global variable 'minstrl'
patch.installed: no visible binding for global variable 'dir.'
patch.installed: no visible binding for global variable 'subdir'
patch.installed: possible error in loadNamespace(pkg, partial = TRUE,
declarativeOnly = TRUE): unused argument(s) (declarativeOnly = TRUE)
patch.installed: warning in load(from, env = e): partial argument match
of 'env' to 'envir'
patch.installed: warning in load(from.nonfuns, env = e): partial
argument match of 'env' to 'envir'
patch.package: no visible binding for global variable '.'
patch.package: no visible global function definition for 'rm.from.pkg'
patch.package: no visible binding for global variable 'doc'
patch.package: no visible binding for global variable 'export.me'
pre.install: no visible binding for global variable 'subdir'
pre.install: no visible binding for global variable 'dir.'
pre.install: warning in dir(mlazy.temp.dir, patt = "^obj[0-9]+.rda$"):
partial argument match of 'patt' to 'pattern'
pre.install: warning in dir(mlazy.inst.dir, patt = "^obj[0-9]+.rda$"):
partial argument match of 'patt' to 'pattern'
pre.install: no visible binding for global variable 'R'
pre.install: no visible binding for global variable 'man'
pre.install: no visible binding for global variable 'inst'
pre.install: no visible binding for global variable 'ewhere'
pre.install: warning in dir(dir., patt = "^Makefile"): partial argument
match of 'patt' to 'pattern'
pre.install : get.nondirs: no visible binding for global variable
'dir.'
pre.install : get.nondirs: warning in list.files(cdir, all.files =
TRUE, full = FALSE, recursive = recursive): partial argument match of
'full' to 'full.names'
pre.install: no visible binding for global variable 'src'
pre.install: no visible binding for global variable 'exec'
pre.install: no visible binding for global variable 'tests'
pre.install: no visible binding for global variable '.'
pre.install : <anonymous>: no visible binding for global variable
'ewhere'
pre.install: no visible binding for global variable 'dll.paths'
pre.install: no visible binding for global variable '.required'
pre.install: no visible binding for global variable 'tasks'
pre.install: no visible binding for global variable '.Traceback'
pre.install: no visible binding for global variable 'last.warning'
pre.install: no visible binding for global variable '.SavedPlots'
pre.install: no visible binding for global variable 'task.path'
pre.install: no visible binding for global variable 'env'
pre.install: no visible binding for global variable '..'
pre.install: warning in dir(demo.dir, patt = "\\.(r|R)$"): partial
argument match of 'patt' to 'pattern'
pre.install: no visible binding for global variable 'exclude.funs'
pre.install: no visible binding for global variable 'exclude.data'
pre.install: warning in source.mvb(rfile, env = e): partial argument
match of 'env' to 'envir'
pre.install: warning in dir(Rd.dir, patt = "\\.Rd$", all.files = TRUE):
partial argument match of 'patt' to 'pattern'
pre.install : provisionally.add.man.file: no visible binding for global
variable 'subdir'
pre.install : Rdconv.internals: no visible binding for global variable
'ewhere'
pre.install: no visible binding for global variable '.First.lib'
pre.install: no visible binding for global variable '.onAttach'
promote.2.to.1: warning in load.mvb(file = file.path(full.path,
".RData"), name = names(full.path), pos = 1, path = full.path):
partial argument match of 'file' to 'filename'
rcmdgeneric.pkg: no visible binding for global variable 'dir.'
rcmdgeneric.pkg: no visible binding for global variable 'subdir'
rcmdgeneric.pkg: no visible binding for global variable 'ewhere'
reattach.placeholder: no visible global function definition for
'get.image.filename'
restore.all.backups: no visible global function definition for
'replace.underscores'
save.mchanged: no visible binding for global variable '.'
save.refdb: no visible binding for global variable '.'
save.refdb: no visible binding for global variable 'name'
save.refdb: no visible binding for global variable 'task.tree'
set.pkg.and.dir: no visible binding for global variable
'character.only'
set.pkg.and.dir: no visible binding for global variable
'dir.above.source'
set.rcmd.vars: no visible binding for global variable 'sep'
setup.dontruns: no visible binding for global variable '.'
setup.mcache: no visible binding for global variable '.'
subco: no visible binding for global variable 'Rd.version'
unpackage: warning in dir(x, all = TRUE): partial argument match of
'all' to 'all.files'
unpackage : filecop: warning in dir(file.path(spath, fname), all =
TRUE): partial argument match of 'all' to 'all.files'
unpackage: warning in dir(spath, all = TRUE): partial argument match of
'all' to 'all.files'
unpackage: no visible binding for global variable '.'
unpackage: no visible binding for global variable 'CONTENTS'
unpackage: no visible binding for global variable 'INDEX'
unpackage: no visible binding for global variable 'MD5'
unpackage: no visible binding for global variable 'NAMESPACE'
unpackage: no visible binding for global variable '..'
unpackage: no visible binding for global variable 'src'
unpackage: no visible binding for global variable 'chtml'
unpackage: no visible binding for global variable 'html'
unpackage: no visible binding for global variable 'latex'
unpackage: no visible binding for global variable 'meta'
unpackage: no visible binding for global variable 'R'
unpackage: no visible binding for global variable 'libs'
unpackage: warning in dir(file.path(spath, "R"), patt = "[.][RrSsq]$",
full = TRUE): partial argument match of 'patt' to 'pattern'
unpackage: warning in dir(file.path(spath, "R"), patt = "[.][RrSsq]$",
full = TRUE): partial argument match of 'full' to 'full.names'
unpackage: warning in dir(datdir, patt =
"[.](R|r|rda|Rdata|txt|TXT|tab|csv|CSV)$"): partial argument match of
'patt' to 'pattern'
unpackage: warning in dir(file.path(spath, "man"), patt = "Rd$", full =
TRUE): partial argument match of 'patt' to 'pattern'
unpackage: warning in dir(file.path(spath, "man"), patt = "Rd$", full =
TRUE): partial argument match of 'full' to 'full.names'
unpackage.installed: warning in dir(x, all = TRUE): partial argument
match of 'all' to 'all.files'
unpackage.installed : filecop: warning in dir(file.path(ipath, fname),
all = TRUE): partial argument match of 'all' to 'all.files'
unpackage.installed: warning in dir(ipath, all = TRUE): partial
argument match of 'all' to 'all.files'
unpackage.installed: no visible binding for global variable '.'
unpackage.installed: no visible binding for global variable
'DESCRIPTION'
unpackage.installed: no visible binding for global variable 'CONTENTS'
unpackage.installed: no visible binding for global variable 'INDEX'
unpackage.installed: no visible binding for global variable 'MD5'
unpackage.installed: no visible binding for global variable '..'
unpackage.installed: no visible binding for global variable 'src'
unpackage.installed: no visible binding for global variable 'chtml'
unpackage.installed: no visible binding for global variable 'html'
unpackage.installed: no visible binding for global variable 'latex'
unpackage.installed: no visible binding for global variable 'meta'
unpackage.installed: no visible binding for global variable 'R'
unpackage.installed: no visible binding for global variable
'file.with.source'
unpackage.installed: warning in dir(datdir, patt =
"[.](R|r|rda|Rdata|txt|TXT|tab|csv|CSV)$"): partial argument match of
'patt' to 'pattern'
update.installed.dir: warning in list.files(fp(opath, source), full =
TRUE, recursive = TRUE): partial argument match of 'full' to
'full.names'
update.installed.dir: warning in list.files(fp(ipath, installed), full
= TRUE, recursive = TRUE): partial argument match of 'full' to
'full.names'
update.loaded.pkg: no visible binding for global variable 'doc'
update.loaded.pkg: no visible binding for global variable 'export.me'
update.maintained.package: warning in load.refdb(env = mp): partial
argument match of 'env' to 'envir'
write.mvb.tasks: warning in get("tasks", env = env): partial argument
match of 'env' to 'envir'
write.sourceable.function: no visible binding for global variable
'bug.position'
Found .Internal calls in the following functions:
'Sys.putenv' 'exists.mvb' 'mvb.sys.call' 'zip.file.extract2'
with calls to .Internal functions
'Sys.setenv' 'exists' 'int.unzip' 'sys.call'
Packages should not call .Internal(): it is not part of the API, for
use only by R itself and subject to change without notice.
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking R/sysdata.rda ... OK
- checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
- checking PDF version of manual ... OK
NOTE: There was 1 note.
See
'd:/Rcompile/CRANpkg/local/2.15/mvbutils.Rcheck/00check.log'
for details.