• using R version 2.15.0 (2012-03-30)
• using platform: x86_64-pc-mingw32 (64-bit)
• using session charset: ISO8859-1
• checking for file 'mlmRev/DESCRIPTION' ... OK
• this is package 'mlmRev' version '1.0-1'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking whether package 'mlmRev' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• loading checks for arch 'i386'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• loading checks for arch 'x64'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under 'inst/doc' ... OK
• checking installed files from 'inst/doc' ... NOTE
  The following files should probably not be installed:
  'myVignette.sty'
  
  Consider the use of a .Rinstignore file: see 'Writing R Extensions',
  or move the vignette sources from 'inst/doc' to 'vignettes'.
• checking examples ...
  ** running examples for arch 'i386' ... OK
  ** running examples for arch 'x64' ... OK
• checking for unstated dependencies in tests ... OK
• checking tests ...
  ** running tests for arch 'i386' OK
  Running 'guImmun.R'
  Comparing 'guImmun.Rout' to 'guImmun.Rout.save' ...5,10d4
  < Attaching package: 'lme4'
  <
  < The following object(s) are masked from 'package:stats':
  <
  < AIC, BIC
  <
  32,33c26,27
  < mom25pY -0.1284 0.1543 -0.83 0.4054
  < ord23 -0.1385 0.1609 -0.86 0.3893
  ---
  > mom25pY -0.1284 0.1543 -0.83 0.4055
  > ord23 -0.1385 0.1609 -0.86 0.3892
  35,37c29,31
  < ord7p 0.2893 0.2483 1.17 0.2440
  < ethnN -0.1132 0.3125 -0.36 0.7173
  < ethnS -0.0348 0.2322 -0.15 0.8810
  ---
  > ord7p 0.2893 0.2483 1.16 0.2440
  > ethnN -0.1131 0.3125 -0.36 0.7173
  > ethnS -0.0347 0.2322 -0.15 0.8810
  44,45c38,39
  < ruralY -0.6494 0.1985 -3.27 0.0011 **
  < pcInd81 -0.8574 0.3257 -2.63 0.0085 **
  ---
  > ruralY -0.6493 0.1985 -3.27 0.0011 **
  > pcInd81 -0.8572 0.3257 -2.63 0.0085 **
  87,92c81,86
  < mom25pY -0.1360 0.1537 -0.88 0.37645
  < ord23 -0.1374 0.1605 -0.86 0.39168
  < ord46 0.1556 0.1977 0.79 0.43142
  < ord7p 0.2404 0.2464 0.98 0.32909
  < ethnN -0.2206 0.3095 -0.71 0.47605
  < ethnS -0.0784 0.2311 -0.34 0.73443
  ---
  > mom25pY -0.1359 0.1537 -0.88 0.37652
  > ord23 -0.1375 0.1605 -0.86 0.39166
  > ord46 0.1556 0.1977 0.79 0.43148
  > ord7p 0.2404 0.2464 0.98 0.32913
  > ethnN -0.2206 0.3095 -0.71 0.47600
  > ethnS -0.0784 0.2311 -0.34 0.73438
  94,95c88,89
  < momEdS 0.3876 0.2766 1.40 0.16113
  < momWorkY 0.2721 0.1283 2.12 0.03389 *
  ---
  > momEdS 0.3876 0.2766 1.40 0.16115
  > momWorkY 0.2721 0.1283 2.12 0.03390 *
  97c91
  < pcInd81 -0.8354 0.3251 -2.57 0.01017 *
  ---
  > pcInd81 -0.8354 0.3251 -2.57 0.01018 *
  111c105
  < mom (Intercept) 1.2410 1.1140
  ---
  > mom (Intercept) 1.2411 1.1140
  117c111
  < (Intercept) -0.6971 0.2687 -2.59 0.00948 **
  ---
  > (Intercept) -0.6971 0.2687 -2.59 0.00947 **
  119,121c113,115
  < mom25pY 0.0258 0.1163 0.22 0.82417
  < ethnN -0.2172 0.3068 -0.71 0.47894
  < ethnS -0.0812 0.2293 -0.35 0.72324
  ---
  > mom25pY 0.0258 0.1163 0.22 0.82405
  > ethnN -0.2172 0.3068 -0.71 0.47896
  > ethnS -0.0812 0.2294 -0.35 0.72324
  123c117
  < momEdS 0.3266 0.2708 1.21 0.22783
  ---
  > momEdS 0.3266 0.2708 1.21 0.22778
  126c120
  < pcInd81 -0.8367 0.3220 -2.60 0.00937 **
  ---
  > pcInd81 -0.8366 0.3220 -2.60 0.00938 **
  Running 'lmerTest.R'
  Comparing 'lmerTest.Rout' to 'lmerTest.Rout.save' ...6,11d5
  < Attaching package: 'lme4'
  <
  < The following object(s) are masked from 'package:stats':
  <
  < AIC, BIC
  <
  171c165
  < fm3 7 16519 16567 -8253 0.0 0 1
  ---
  > fm3 7 16519 16567 -8253 0.0 0 <2e-16
  212,213c206,207
  < school (Intercept) 0.08583 0.293
  < Residual 0.56253 0.750
  ---
  > school (Intercept) 0.08583 0.2930
  > Residual 0.56253 0.7500
  297c291
  < Subject (Intercept) 64.0346 8.0022
  ---
  > Subject (Intercept) 64.0345 8.0022
  354c348
  < fm08 12 649.4 690.8 -312.7 0 0 <2e-16
  ---
  > fm08 12 649.4 690.8 -312.7 1.68e-06 0 <2e-16
  356c350
  < + logLik(fm08, REML=FALSE), tol=1e-07))
  ---
  > + logLik(fm08, REML=FALSE)))
  Running 'versions.R'
  ** running tests for arch 'x64' OK
  Running 'guImmun.R'
  Comparing 'guImmun.Rout' to 'guImmun.Rout.save' ...5,10d4
  < Attaching package: 'lme4'
  <
  < The following object(s) are masked from 'package:stats':
  <
  < AIC, BIC
  <
  32c26
  < mom25pY -0.1284 0.1543 -0.83 0.4054
  ---
  > mom25pY -0.1284 0.1543 -0.83 0.4055
  36,37c30,31
  < ethnN -0.1132 0.3125 -0.36 0.7173
  < ethnS -0.0348 0.2322 -0.15 0.8810
  ---
  > ethnN -0.1131 0.3125 -0.36 0.7173
  > ethnS -0.0347 0.2322 -0.15 0.8810
  42c36
  < husEdU 0.0147 0.2296 0.06 0.9491
  ---
  > husEdU 0.0146 0.2296 0.06 0.9492
  45c39
  < pcInd81 -0.8574 0.3257 -2.63 0.0085 **
  ---
  > pcInd81 -0.8572 0.3257 -2.63 0.0085 **
  87,89c81,83
  < mom25pY -0.1360 0.1537 -0.88 0.37650
  < ord23 -0.1375 0.1605 -0.86 0.39165
  < ord46 0.1556 0.1977 0.79 0.43147
  ---
  > mom25pY -0.1359 0.1537 -0.88 0.37652
  > ord23 -0.1375 0.1605 -0.86 0.39166
  > ord46 0.1556 0.1977 0.79 0.43148
  91,92c85,86
  < ethnN -0.2206 0.3095 -0.71 0.47598
  < ethnS -0.0784 0.2311 -0.34 0.73436
  ---
  > ethnN -0.2206 0.3095 -0.71 0.47600
  > ethnS -0.0784 0.2311 -0.34 0.73438
  94,95c88,89
  < momEdS 0.3876 0.2766 1.40 0.16112
  < momWorkY 0.2721 0.1283 2.12 0.03391 *
  ---
  > momEdS 0.3876 0.2766 1.40 0.16115
  > momWorkY 0.2721 0.1283 2.12 0.03390 *
  97c91
  < pcInd81 -0.8354 0.3251 -2.57 0.01017 *
  ---
  > pcInd81 -0.8354 0.3251 -2.57 0.01018 *
  111c105
  < mom (Intercept) 1.2410 1.1140
  ---
  > mom (Intercept) 1.2411 1.1140
  119,124c113,118
  < mom25pY 0.0258 0.1163 0.22 0.82412
  < ethnN -0.2172 0.3068 -0.71 0.47898
  < ethnS -0.0812 0.2294 -0.35 0.72332
  < momEdP 0.3339 0.1366 2.44 0.01451 *
  < momEdS 0.3266 0.2708 1.21 0.22777
  < momWorkY 0.2538 0.1272 2.00 0.04591 *
  ---
  > mom25pY 0.0258 0.1163 0.22 0.82405
  > ethnN -0.2172 0.3068 -0.71 0.47896
  > ethnS -0.0812 0.2294 -0.35 0.72324
  > momEdP 0.3339 0.1366 2.44 0.01453 *
  > momEdS 0.3266 0.2708 1.21 0.22778
  > momWorkY 0.2538 0.1272 2.00 0.04592 *
  162c156
  < mom25pY 0.0259 0.1162 0.22 0.82334
  ---
  > mom25pY 0.0259 0.1162 0.22 0.82333
  Running 'lmerTest.R'
  Comparing 'lmerTest.Rout' to 'lmerTest.Rout.save' ...6,11d5
  < Attaching package: 'lme4'
  <
  < The following object(s) are masked from 'package:stats':
  <
  < AIC, BIC
  <
  52c46
  < (Intercept) 40.7496 0.2881 141.4
  ---
  > (Intercept) 40.7496 0.2881 141.5
  54c48
  < avg.IQ.ver.cen 1.4089 0.3238 4.4
  ---
  > avg.IQ.ver.cen 1.4089 0.3237 4.4
  171c165
  < fm3 7 16519 16567 -8253 0.0 0 1
  ---
  > fm3 7 16519 16567 -8253 0.0 0 <2e-16
  212,213c206,207
  < school (Intercept) 0.08583 0.293
  < Residual 0.56253 0.750
  ---
  > school (Intercept) 0.08583 0.2930
  > Residual 0.56253 0.7500
  241c235
  < lea (Intercept) 0.01477 0.1215
  ---
  > lea (Intercept) 0.01478 0.1216
  297c291
  < Subject (Intercept) 64.0353 8.0022
  ---
  > Subject (Intercept) 64.0345 8.0022
  326c320
  < Subject (Intercept) 64.0348 8.0022
  ---
  > Subject (Intercept) 64.0346 8.0022
  354c348
  < fm08 12 649.4 690.8 -312.7 0 0 1
  ---
  > fm08 12 649.4 690.8 -312.7 1.68e-06 0 <2e-16
  356c350
  < + logLik(fm08, REML=FALSE), tol=1e-07))
  ---
  > + logLik(fm08, REML=FALSE)))
  364,372c358,366
  < 1: 14869.350: 0.271130 0.0962178
  < 2: 14869.120: 0.234541 0.0337752
  < 3: 14868.448: 0.257104 0.0405373
  < 4: 14868.361: 0.249361 0.0627829
  < 5: 14868.329: 0.253833 0.0616933
  < 6: 14868.328: 0.255792 0.0575286
  < 7: 14868.326: 0.254891 0.0578339
  < 8: 14868.325: 0.254282 0.0585646
  < 9: 14868.325: 0.254614 0.0587515
  ---
  > 1: 14869.350: 0.271130 0.0962183
  > 2: 14869.120: 0.234540 0.0337758
  > 3: 14868.448: 0.257104 0.0405381
  > 4: 14868.361: 0.249359 0.0627845
  > 5: 14868.329: 0.253832 0.0616944
  > 6: 14868.328: 0.255792 0.0575285
  > 7: 14868.326: 0.254891 0.0578338
  > 8: 14868.325: 0.254282 0.0585648
  > 9: 14868.325: 0.254614 0.0587516
  374c368
  < 11: 14868.325: 0.254509 0.0589166
  ---
  > 11: 14868.325: 0.254509 0.0589167
  437c431
  < second (Intercept) 0.04637 0.2153
  ---
  > second (Intercept) 0.04639 0.2154
  439c433
  < Residual 4.21852 2.0539
  ---
  > Residual 4.21851 2.0539
  444c438
  < (Intercept) 5.92742 0.08660 68.4
  ---
  > (Intercept) 5.92741 0.08660 68.4
  Running 'versions.R'
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  'd:/Rcompile/CRANpkg/local/2.15/mlmRev.Rcheck/00check.log'
  for details.