• using R version 3.0.1 (2013-05-16)
  • using platform: x86_64-w64-mingw32 (64-bit)
  • using session charset: ISO8859-1
  • checking for file 'lme4/DESCRIPTION' ... OK
  • this is package 'lme4' version '0.999999-2'
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking whether package 'lme4' can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • loading checks for arch 'i386'
    ** checking whether the package can be loaded ... OK
    ** checking whether the package can be loaded with stated dependencies ... OK
    ** checking whether the package can be unloaded cleanly ... OK
    ** checking whether the namespace can be loaded with stated dependencies ... OK
    ** checking whether the namespace can be unloaded cleanly ... OK
    ** checking loading without being on the library search path ... OK
  • loading checks for arch 'x64'
    ** checking whether the package can be loaded ... OK
    ** checking whether the package can be loaded with stated dependencies ... OK
    ** checking whether the package can be unloaded cleanly ... OK
    ** checking whether the namespace can be loaded with stated dependencies ... OK
    ** checking whether the namespace can be unloaded cleanly ... OK
    ** checking loading without being on the library search path ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... OK
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of 'data' directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking for portable compilation flags in Makevars ... OK
  • checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
  • checking compiled code ... OK
  • checking sizes of PDF files under 'inst/doc' ... OK
  • checking installed files from 'inst/doc' ... OK
  • checking examples ...
    ** running examples for arch 'i386' ... OK
    ** running examples for arch 'x64' ... OK
  • checking for unstated dependencies in tests ... OK
  • checking tests ...
    ** running tests for arch 'i386' OK
    Running 'Gamma.R'
    Running 'agq.R'
    Running 'coefs.R'
    Running 'drop.R'
    Running 'extras.R'
    Running 'getME.R'
    Running 'lmList.R'
    Running 'lmer-1.R'
    Comparing 'lmer-1.Rout' to 'lmer-1.Rout.save' ...431c431
    < 15.2354 0.1856
    ---
    > 15.2355 0.1856
    442c442
    < 140.642 -1.424 -1.424 0.014
    ---
    > 140.641 -1.424 -1.424 0.014
    477c477
    < (Intercept) 15.235
    ---
    > (Intercept) 15.236
    485,486c485,486
    < [1,] -8.3504
    < [2,] 8.3504
    ---
    > [1,] -8.3505
    > [2,] 8.3505
    515c515
    < Error in (function (fr, FL, start, REML, verbose) :
    ---
    > Error in function (fr, FL, start, REML, verbose) :
    Running 'lmer-conv.R'
    Running 'lmer.R'
    Running 'nlmer-conv.R'
    Running 'nlmer.R'
    Comparing 'nlmer.Rout' to 'nlmer.Rout.save' ...60c60
    < Subject lKa 0.227492 0.47696
    ---
    > Subject lKa 0.227490 0.47696
    62c62
    < Residual 0.591691 0.76921
    ---
    > Residual 0.591692 0.76921
    Running 'sigma.R'
    Running 'simulate.R'
    ** running tests for arch 'x64' OK
    Running 'Gamma.R'
    Running 'agq.R'
    Running 'coefs.R'
    Running 'drop.R'
    Running 'extras.R'
    Running 'getME.R'
    Running 'lmList.R'
    Running 'lmer-1.R'
    Comparing 'lmer-1.Rout' to 'lmer-1.Rout.save' ...442c442
    < 140.642 -1.424 -1.424 0.014
    ---
    > 140.641 -1.424 -1.424 0.014
    473c473
    < 1 0 300 900 5
    ---
    > 1 0 300 900 4
    515c515
    < Error in (function (fr, FL, start, REML, verbose) :
    ---
    > Error in function (fr, FL, start, REML, verbose) :
    Running 'lmer-conv.R'
    Running 'lmer.R'
    Running 'nlmer-conv.R'
    Running 'nlmer.R'
    Comparing 'nlmer.Rout' to 'nlmer.Rout.save' ...60c60
    < Subject lKa 0.227496 0.47697
    ---
    > Subject lKa 0.227490 0.47696
    62c62
    < Residual 0.591689 0.76921
    ---
    > Residual 0.591692 0.76921
    68,69c68,69
    < lKa 0.47409 0.15291 3.10
    < lCl -3.23539 0.05236 -61.79
    ---
    > lKa 0.47408 0.15291 3.10
    > lCl -3.23538 0.05236 -61.79
    Running 'sigma.R'
    Running 'simulate.R'
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in 'inst/doc' ... OK
  • checking running R code from vignettes ... OK
  • checking re-building of vignette PDFs ... OK
  • checking PDF version of manual ... OK