- using R version 2.15.0 (2012-03-30)
- using platform: x86_64-pc-mingw32 (64-bit)
- using session charset: ISO8859-1
- checking for file 'lme4/DESCRIPTION' ... OK
- this is package 'lme4' version '0.999375-42'
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking whether package 'lme4' can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
- loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
nlmer : <anonymous>: warning in assign(nm, env = env, mf[[nm]]):
partial argument match of 'env' to 'envir'
nlmer : <anonymous>: warning in assign(nm, env = env,
rep(start$fixef[[nm]], length.out = n)): partial argument match of
'env' to 'envir'
printMer: warning in abbreviate(rn, minlen = 11): partial argument
match of 'minlen' to 'minlength'
printMer: warning in matrix(format(round(corF@x, 3), nsmall = 3), nc =
p, dimnames = list(rns, abbreviate(rn, minlen = 6))): partial
argument match of 'nc' to 'ncol'
printMer: warning in abbreviate(rn, minlen = 6): partial argument match
of 'minlen' to 'minlength'
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable compilation flags in Makevars ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... OK
- checking sizes of PDF files under 'inst/doc' ... OK
- checking installed files from 'inst/doc' ... OK
- checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
- checking for unstated dependencies in tests ... OK
- checking tests ...
** running tests for arch 'i386' OK
Running 'Gamma.R'
Running 'drop.R'
Running 'extras.R'
Running 'lmer-1.R'
Comparing 'lmer-1.Rout' to 'lmer-1.Rout.save' ...138c138
< 6 -1.7594785
---
> 6 -1.7594786
432c432
< group (Intercept) 140.641662 11.85924
---
> group (Intercept) 140.641531 11.85924
439c439
< (Intercept) 15.23545 8.40776 1.812
---
> (Intercept) 15.23552 8.40776 1.812
458c458
< [1,] 7.18679062
---
> [1,] 7.18678711
466c466
< [1] 87.58735
---
> [1] 87.58733
472c472
< 1 0 300 900 4
---
> 1 0 300 900 5
476,477c476,477
< (Intercept) 15.2354454
< x 0.1855864
---
> (Intercept) 15.2355231
> x 0.1855856
484,487c484,487
< [1,] -8.35043172
< [2,] 8.35043172
< [3,] 0.08457406
< [4,] -0.08457406
---
> [1,] -8.35048135
> [2,] 8.35048135
> [3,] 0.08457456
> [4,] -0.08457456
Running 'lmer-conv.R'
Running 'lmer.R'
Running 'nlmer-conv.R'
Running 'nlmer.R'
Comparing 'nlmer.Rout' to 'nlmer.Rout.save' ...6d5
< > ## TODO: nicer version of this is in system.file("test-tools.R", package = "Matrix")
30c29
< lKa 0.227356 0.47682 NaN
---
> lKa 0.227357 0.47682 NaN
32c31
< Residual 0.591717 0.76923
---
> Residual 0.591716 0.76923
38,39c37,38
< lKa 0.47414 0.15287 3.10
< lCl -3.23550 0.05235 -61.80
---
> lKa 0.47414 0.15288 3.10
> lCl -3.23551 0.05235 -61.80
58c57
< Subject lKa 0.227492 0.47696
---
> Subject lKa 0.227493 0.47696
60c59
< Residual 0.591691 0.76921
---
> Residual 0.591689 0.76921
67c66
< lCl -3.23538 0.05236 -61.79
---
> lCl -3.23539 0.05236 -61.79
Running 'simulate.R'
** running tests for arch 'x64' OK
Running 'Gamma.R'
Running 'drop.R'
Running 'extras.R'
Running 'lmer-1.R'
Comparing 'lmer-1.Rout' to 'lmer-1.Rout.save' ... OK
Running 'lmer-conv.R'
Running 'lmer.R'
Running 'nlmer-conv.R'
Running 'nlmer.R'
Comparing 'nlmer.Rout' to 'nlmer.Rout.save' ...6d5
< > ## TODO: nicer version of this is in system.file("test-tools.R", package = "Matrix")
30c29
< lKa 0.227361 0.47682 NaN
---
> lKa 0.227357 0.47682 NaN
32c31
< Residual 0.591715 0.76923
---
> Residual 0.591716 0.76923
39c38
< lCl -3.23550 0.05235 -61.80
---
> lCl -3.23551 0.05235 -61.80
58c57
< Subject lKa 0.227496 0.47697
---
> Subject lKa 0.227493 0.47696
66c65
< lKa 0.47409 0.15291 3.10
---
> lKa 0.47408 0.15291 3.10
Running 'simulate.R'
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in 'inst/doc' ... OK
- checking running R code from vignettes ... OK
- checking re-building of vignette PDFs ... OK
- checking PDF version of manual ... OK
NOTE: There was 1 note.
See
'd:/Rcompile/CRANpkg/local/2.15/lme4.Rcheck/00check.log'
for details.