• using R version 3.0.1 (2013-05-16)
• using platform: x86_64-w64-mingw32 (64-bit)
• using session charset: ISO8859-1
• checking for file 'cobs/DESCRIPTION' ... OK
• this is package 'cobs' version '1.2-2'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'cobs' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch 'i386'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
  ** checking loading without being on the library search path ... OK
• loading checks for arch 'x64'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
  ** checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File 'cobs/R/scobs.R':
  .onLoad calls:
  packageStartupMessage(sprintf("Package %s (%s) loaded. To cite, see citation(\"%s\")\n", pkg, utils::packageDescription(pkg)$Version, pkg))
  
  See section 'Good practice' in '?.onAttach'.
  
  plot.cobs: warning in deparse(x$call, width.cut = 100): partial
  argument match of 'width.cut' to 'width.cutoff'
  plot.cobs: warning in formatC(x$lambda, dig = 3): partial argument
  match of 'dig' to 'digits'
  summary.cobs: warning in .print.part(object$coef, nMin = 7, nam =
  "coef", digits = digits): partial argument match of 'nam' to 'namX'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ...
  ** running examples for arch 'i386' ... OK
  ** running examples for arch 'x64' ... OK
• checking for unstated dependencies in tests ... OK
• checking tests ...
  ** running tests for arch 'i386' OK
  Running 'ex1.R'
  Comparing 'ex1.Rout' to 'ex1.Rout.save' ...409c409,410
  < [1,] 2.30776 16 18 250.3 7.5999 11
  ---
  > [1,] 2.30776 16 18 250.300 7.59990 11
  > [2,] 4.51708 16 18 258.955 1.78571 6
  447,461c448,462
  < 1 -18.0106882 -9.829673 6.86289 23.5555 31.7365
  < 2 -15.9869410 -8.308680 7.35806 23.0248 30.7031
  < 3 -14.7253888 -7.299594 7.85201 23.0036 30.4294
  < 4 -14.0304363 -6.671151 8.34475 23.3607 30.7199
  < 5 -13.6842226 -6.277146 8.83627 23.9497 31.3568
  < 6 -13.4881963 -5.984331 9.32657 24.6375 32.1413
  < 7 -13.2846850 -5.686894 9.81566 25.3182 32.9160
  < 8 -12.9604493 -5.308839 10.30352 25.9159 33.5675
  < 9 -12.4418507 -4.800749 10.79017 26.3811 34.0222
  < 10 -11.6889861 -4.135844 11.27560 26.6871 34.2402
  < 11 -10.6923969 -3.307777 11.75982 26.8274 34.2120
  < 12 -9.4739638 -2.331231 12.24282 26.8169 33.9596
  < 13 -8.0930594 -1.246052 12.72460 26.6952 33.5422
  < 14 -6.6587118 -0.125408 13.20516 26.5357 33.0690
  < 15 -5.3461742 0.913089 13.68450 26.4559 32.7152
  ---
  > 1 -18.0106904 -9.829675 6.86289 23.5554 31.7365
  > 2 -15.9869429 -8.308682 7.35806 23.0248 30.7031
  > 3 -14.7253905 -7.299596 7.85201 23.0036 30.4294
  > 4 -14.0304378 -6.671153 8.34475 23.3607 30.7199
  > 5 -13.6842240 -6.277147 8.83627 23.9497 31.3568
  > 6 -13.4881974 -5.984332 9.32657 24.6375 32.1413
  > 7 -13.2846860 -5.686895 9.81565 25.3182 32.9160
  > 8 -12.9604501 -5.308840 10.30352 25.9159 33.5675
  > 9 -12.4418514 -4.800750 10.79017 26.3811 34.0222
  > 10 -11.6889866 -4.135844 11.27560 26.6871 34.2402
  > 11 -10.6923973 -3.307777 11.75982 26.8274 34.2120
  > 12 -9.4739641 -2.331232 12.24282 26.8169 33.9596
  > 13 -8.0930597 -1.246053 12.72459 26.6952 33.5422
  > 14 -6.6587120 -0.125409 13.20516 26.5357 33.0690
  > 15 -5.3461743 0.913089 13.68450 26.4559 32.7152
  463c464
  < 17 -3.5579639 2.427497 14.64024 26.8530 32.8385
  ---
  > 17 -3.5579640 2.427497 14.64024 26.8530 32.8385
  552c553
  < [1] 6.862889 10.368778 14.880952 17.119048 19.547619 22.166667 24.976190
  ---
  > [1] 6.862887 10.368778 14.880952 17.119048 19.547619 22.166667 24.976190
  569c570,573
  < [1,] 0.00279592 15 18 263.5 4 18
  ---
  > [1,] 0.00279592 15 18 263.50 4 18
  > [2,] 0.00547257 15 18 263.50 4 18
  > [3,] 0.30774511 12 18 263.50 4 18
  > [4,] 2.30776272 16 18 264.75 1 15
  603c607
  < $ ifl : int [1:25] 18 1 1 1 1 1 1 1 1 1 ...
  ---
  > $ ifl : int [1:25] 18 18 1 1 1 1 1 18 1 1 ...
  615c619
  < 8 -15.261611 -6.733216 10.66814 28.0695 36.5979
  ---
  > 8 -15.261611 -6.733215 10.66814 28.0695 36.5979
  882,883c886,887
  < Warning message:
  < In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) :
  ---
  > Warning messages:
  > 1: In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) :
  885a890,891
  > 2: In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) :
  > Check 'ifl'
  889a896,899
  >
  > **** ERROR in algorithm: ifl = 18
  >
  >
  893c903
  < R^2 = 95.93% ; empirical tau (over all): 245/500 = 0.49 (target tau= 0.5)
  ---
  > R^2 = 95.93% ; empirical tau (over all): 247/500 = 0.494 (target tau= 0.5)
  909c919
  < R^2 = 96.02% ; empirical tau (over all): 247/500 = 0.494 (target tau= 0.5)
  ---
  > R^2 = 96.02% ; empirical tau (over all): 248/500 = 0.496 (target tau= 0.5)
  1289c1299
  < [21] -1.82479e+00 3.65435e-11
  ---
  > [21] -1.82479e+00 3.65434e-11
  Running 'ex2-long.R'
  Comparing 'ex2-long.Rout' to 'ex2-long.Rout.save' ...30c30
  < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ...
  ---
  > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ...
  176c176
  < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ...
  ---
  > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ...
  308c308
  < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ...
  ---
  > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ...
  446c446
  < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ...
  ---
  > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ...
  584c584
  < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ...
  ---
  > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ...
  719c719
  < [61] -0.0094285 432.6957870
  ---
  > [61] -0.0094285 432.6957858
  1356c1356
  < $ icyc : int 51
  ---
  > $ icyc : int 50
  1477c1477
  < [57] 0.40976 0.40976 0.40976 0.40976 0.38342 386.84287
  ---
  > [57] 0.40976 0.40976 0.40976 0.40976 0.38342 386.84235
  1484c1484
  < [1] 0.8153
  ---
  > [1] 0.81529
  1488c1488
  < [1] 0.81885
  ---
  > [1] 0.81881
  Running 'ex3.R'
  Comparing 'ex3.Rout' to 'ex3.Rout.save' ... OK
  Running 'multi-constr.R'
  Comparing 'multi-constr.Rout' to 'multi-constr.Rout.save' ...257,258d256
  < Warning message:
  < In cobs(x, y, constraint = "increase", pointwise = con) : Check 'ifl'
  Running 'pt-ex.R'
  Running 'roof.R'
  Comparing 'roof.Rout' to 'roof.Rout.save' ... OK
  Running 'small-ex.R'
  Comparing 'small-ex.Rout' to 'small-ex.Rout.save' ... OK
  Running 'spline-ex.R'
  Comparing 'spline-ex.Rout' to 'spline-ex.Rout.save' ... OK
  Running 'temp.R'
  Comparing 'temp.Rout' to 'temp.Rout.save' ... OK
  Running 'wind.R'
  Comparing 'wind.Rout' to 'wind.Rout.save' ...99c99
  < R^2 = 8.22% ; empirical tau (over all): 3287/6574 = 0.5 (target tau= 0.5)
  ---
  > R^2 = 8.22% ; empirical tau (over all): 3286/6574 = 0.4998479 (target tau= 0.5)
  239a240,242
  > Warning in cobs(day, speed, knots.add = TRUE, constraint = "periodic", nknots = 10, :
  > The algorithm has not converged after 100 iterations for at least one lambda
  > Check to make sure that your constraint is feasible
  376c379
  < empirical tau (over all): 658/6574 = 0.1000913 (target tau= 0.1)
  ---
  > empirical tau (over all): 657/6574 = 0.09993915 (target tau= 0.1)
  ** running tests for arch 'x64' OK
  Running 'ex1.R'
  Comparing 'ex1.Rout' to 'ex1.Rout.save' ...409c409,410
  < [1,] 2.30776 16 18 250.3 7.5999 11
  ---
  > [1,] 2.30776 16 18 250.300 7.59990 11
  > [2,] 4.51708 16 18 258.955 1.78571 6
  447,453c448,454
  < 1 -18.0106902 -9.829675 6.86289 23.5554 31.7365
  < 2 -15.9869427 -8.308682 7.35806 23.0248 30.7031
  < 3 -14.7253903 -7.299595 7.85201 23.0036 30.4294
  < 4 -14.0304377 -6.671152 8.34475 23.3607 30.7199
  < 5 -13.6842238 -6.277147 8.83627 23.9497 31.3568
  < 6 -13.4881973 -5.984332 9.32657 24.6375 32.1413
  < 7 -13.2846859 -5.686895 9.81565 25.3182 32.9160
  ---
  > 1 -18.0106904 -9.829675 6.86289 23.5554 31.7365
  > 2 -15.9869429 -8.308682 7.35806 23.0248 30.7031
  > 3 -14.7253905 -7.299596 7.85201 23.0036 30.4294
  > 4 -14.0304378 -6.671153 8.34475 23.3607 30.7199
  > 5 -13.6842240 -6.277147 8.83627 23.9497 31.3568
  > 6 -13.4881974 -5.984332 9.32657 24.6375 32.1413
  > 7 -13.2846860 -5.686895 9.81565 25.3182 32.9160
  569,572c570,573
  < [1,] 0.0107117 16 18 263.500 4.00000 18
  < [2,] 0.3077451 12 18 263.500 4.00000 18
  < [3,] 1.1790290 15 18 263.944 1.77778 16
  < [4,] 2.3077627 16 18 264.750 1.00000 15
  ---
  > [1,] 0.00279592 15 18 263.50 4 18
  > [2,] 0.00547257 15 18 263.50 4 18
  > [3,] 0.30774511 12 18 263.50 4 18
  > [4,] 2.30776272 16 18 264.75 1 15
  606c607
  < $ ifl : int [1:25] 1 1 18 1 1 1 1 18 1 18 ...
  ---
  > $ ifl : int [1:25] 18 18 1 1 1 1 1 18 1 1 ...
  885,886c886,887
  < Warning message:
  < In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) :
  ---
  > Warning messages:
  > 1: In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) :
  888a890,891
  > 2: In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) :
  > Check 'ifl'
  892a896,899
  >
  > **** ERROR in algorithm: ifl = 18
  >
  >
  896c903
  < R^2 = 95.93% ; empirical tau (over all): 246/500 = 0.492 (target tau= 0.5)
  ---
  > R^2 = 95.93% ; empirical tau (over all): 247/500 = 0.494 (target tau= 0.5)
  906,908d912
  < Warning message:
  < In cobs(x, y, "decrease", knots = ux, nknots = length(ux), degree = 1) :
  < Check 'ifl'
  912,915d915
  <
  < **** ERROR in algorithm: ifl = 18
  <
  <
  919c919
  < R^2 = 96.02% ; empirical tau (over all): 250/500 = 0.5 (target tau= 0.5)
  ---
  > R^2 = 96.02% ; empirical tau (over all): 248/500 = 0.496 (target tau= 0.5)
  1299c1299
  < [21] -1.82479e+00 3.65435e-11
  ---
  > [21] -1.82479e+00 3.65434e-11
  Running 'ex2-long.R'
  Comparing 'ex2-long.Rout' to 'ex2-long.Rout.save' ...30c30
  < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ...
  ---
  > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ...
  176c176
  < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ...
  ---
  > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ...
  308c308
  < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ...
  ---
  > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ...
  446c446
  < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ...
  ---
  > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ...
  584c584
  < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ...
  ---
  > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ...
  719c719
  < [61] -0.0094285 432.6957894
  ---
  > [61] -0.0094285 432.6957858
  1477c1477
  < [57] 0.40976 0.40976 0.40976 0.40976 0.38342 386.84256
  ---
  > [57] 0.40976 0.40976 0.40976 0.40976 0.38342 386.84235
  1484c1484
  < [1] 0.81533
  ---
  > [1] 0.81529
  1488c1488
  < [1] 0.81897
  ---
  > [1] 0.81881
  Running 'ex3.R'
  Comparing 'ex3.Rout' to 'ex3.Rout.save' ... OK
  Running 'multi-constr.R'
  Comparing 'multi-constr.Rout' to 'multi-constr.Rout.save' ...257,258d256
  < Warning message:
  < In cobs(x, y, constraint = "increase", pointwise = con) : Check 'ifl'
  Running 'pt-ex.R'
  Running 'roof.R'
  Comparing 'roof.Rout' to 'roof.Rout.save' ... OK
  Running 'small-ex.R'
  Comparing 'small-ex.Rout' to 'small-ex.Rout.save' ... OK
  Running 'spline-ex.R'
  Comparing 'spline-ex.Rout' to 'spline-ex.Rout.save' ... OK
  Running 'temp.R'
  Comparing 'temp.Rout' to 'temp.Rout.save' ... OK
  Running 'wind.R'
  Comparing 'wind.Rout' to 'wind.Rout.save' ...99c99
  < R^2 = 8.22% ; empirical tau (over all): 3287/6574 = 0.5 (target tau= 0.5)
  ---
  > R^2 = 8.22% ; empirical tau (over all): 3286/6574 = 0.4998479 (target tau= 0.5)
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  'd:/Rcompile/CRANpkg/local/3.0/cobs.Rcheck/00check.log'
  for details.