• using R version 3.0.0 (2013-04-03)
• using platform: x86_64-w64-mingw32 (64-bit)
• using session charset: ISO8859-1
• checking for file 'TwoStepCLogit/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'TwoStepCLogit' version '1.2.1'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'TwoStepCLogit' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... OK
• checking differences from 'TwoStepCLogit-Ex.Rout' to 'TwoStepCLogit-Ex.Rout.save' ...
  3c3,13
  < > base::assign(".oldSearch", base::search(), pos = 'CheckExEnv')
  ---
  > > assign(".oldSearch", search(), pos = 'CheckExEnv')
  > > assign(".ExTimings", "TwoStepCLogit-Ex.timings", pos = 'CheckExEnv')
  > > cat("name\tuser\tsystem\telapsed\n", file=get(".ExTimings", pos = 'CheckExEnv'))
  > > assign(".format_ptime",
  > + function(x) {
  > + if(!is.na(x[4L])) x[1L] <- x[1L] + x[4L]
  > + if(!is.na(x[5L])) x[2L] <- x[2L] + x[5L]
  > + format(x[1L:3L])
  > + },
  > + pos = 'CheckExEnv')
  > >
  9a20
  > > assign(".ptime", proc.time(), pos = "CheckExEnv")
  86a98,100
  > >
  > > assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
  > > cat("Ts.estim", get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
  92a107
  > > assign(".ptime", proc.time(), pos = "CheckExEnv")
  167a183,185
  > >
  > > assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
  > > cat("bison", get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
  173a192
  > > assign(".ptime", proc.time(), pos = "CheckExEnv")
  198a218,220
  > >
  > > assign(".dptime", (proc.time() - get(".ptime", pos = "CheckExEnv")), pos = "CheckExEnv")
  > > cat("ddim", get(".format_ptime", pos = 'CheckExEnv')(get(".dptime", pos = "CheckExEnv")), "\n", file=get(".ExTimings", pos = 'CheckExEnv'), append=TRUE, sep="\t")
  201c223
  < > base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
  ---
  > > cat("Time elapsed: ", proc.time() - get("ptime", pos = 'CheckExEnv'),"\n")
  OK
• checking PDF version of manual ... OK