• using R version 3.0.1 (2013-05-16)
• using platform: x86_64-w64-mingw32 (64-bit)
• using session charset: ISO8859-1
• checking for file 'SlimPLS/DESCRIPTION' ... OK
• this is package 'SlimPLS' version '0.3'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... NOTE
  Found the following hidden files and directories:
  .project
  These were most likely included in error. See section 'Package
  structure' in the 'Writing R Extensions' manual.
• checking for portable file names ... OK
• checking whether package 'SlimPLS' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  PLS_core_k_dist_learning: warning in PLS_core_write_file(q_mat, file =
  "PLS_q_mat.txt"): partial argument match of 'file' to 'file_name'
  PLS_core_k_dist_learning: warning in PLS_core_write_file(p_mat, file =
  "PLS_p_mat.txt"): partial argument match of 'file' to 'file_name'
  PLS_core_k_dist_learning: warning in PLS_core_write_file(w_mat, file =
  "PLS_w_mat.txt"): partial argument match of 'file' to 'file_name'
  PLS_core_k_dist_learning: warning in PLS_core_write_file(t_mat, file =
  paste("PLS_t_mat_learn", file_name, ".txt", sep = "")): partial
  argument match of 'file' to 'file_name'
  PLS_core_learning: warning in PLS_core_write_file(q_mat, file =
  "PLS_q_mat.txt"): partial argument match of 'file' to 'file_name'
  PLS_core_learning: warning in PLS_core_write_file(p_mat, file =
  "PLS_p_mat.txt"): partial argument match of 'file' to 'file_name'
  PLS_core_learning: warning in PLS_core_write_file(w_mat, file =
  "PLS_w_mat.txt"): partial argument match of 'file' to 'file_name'
  PLS_core_learning: warning in PLS_core_write_file(t_mat, file =
  paste("PLS_t_mat_learn", file_name, ".txt", sep = "")): partial
  argument match of 'file' to 'file_name'
  PLS_core_predict: warning in PLS_core_write_file(t_mat, file =
  "PLS_t_mat_predict.txt"): partial argument match of 'file' to
  'file_name'
  PLS_find_num_components: warning in PLS_core_write_file(w_mat[, 1:i],
  file = "PLS_w_mat.txt"): partial argument match of 'file' to
  'file_name'
  PLS_find_num_components: warning in PLS_core_write_file(w_mat[, 1:(i -
  1)], file = "PLS_w_mat.txt"): partial argument match of 'file' to
  'file_name'
  getClassification: warning in PLS_core_write_file(w_mat, file =
  "PLS_w_mat.txt"): partial argument match of 'file' to 'file_name'
  trainClassifier: warning in PLS_core_write_file(w_mat, file =
  "PLS_w_mat.txt"): partial argument match of 'file' to 'file_name'
• checking Rd files ... NOTE
  prepare_Rd: SlimPLS-package.Rd:70-71: Dropping empty section \seealso
  prepare_Rd: SlimPLS-package.Rd:72-74: Dropping empty section \examples
  prepare_Rd: classificationModel-class.Rd:34: Dropping empty section \note
  prepare_Rd: classificationModel-class.Rd:32: Dropping empty section \references
  prepare_Rd: classificationModel-class.Rd:37-38: Dropping empty section \examples
  prepare_Rd: expMat-class.Rd:54: Dropping empty section \note
  prepare_Rd: expMat-class.Rd:52: Dropping empty section \references
  prepare_Rd: expMat-class.Rd:59-60: Dropping empty section \examples
  prepare_Rd: featureSet-class.Rd:58: Dropping empty section \note
  prepare_Rd: featureSet-class.Rd:56: Dropping empty section \references
  prepare_Rd: featureSet-class.Rd:63-64: Dropping empty section \examples
  prepare_Rd: getClassification.Rd:35-36: Dropping empty section \note
  prepare_Rd: getClassification.Rd:34: Dropping empty section \author
  prepare_Rd: getClassification.Rd:33: Dropping empty section \references
  prepare_Rd: readExpMat.Rd:24-26: Dropping empty section \details
  prepare_Rd: readExpMat.Rd:30: Dropping empty section \references
  prepare_Rd: selectFeatures.Rd:57: Dropping empty section \note
  prepare_Rd: selectFeaturesSlimPLS.Rd:54: Dropping empty section \note
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... OK
• checking PDF version of manual ... OK
  NOTE: There were 3 notes.
  See
  'd:/Rcompile/CRANpkg/local/3.0/SlimPLS.Rcheck/00check.log'
  for details.