• using R version 3.0.1 (2013-05-16)
• using platform: x86_64-w64-mingw32 (64-bit)
• using session charset: ISO8859-1
• checking for file 'HumMeth27QCReport/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'HumMeth27QCReport' version '1.2.14'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... NOTE
  Found the following hidden files and directories:
  inst/.Rhistory
  inst/doc/.Rhistory
  inst/extdata/.Rhistory
  These were most likely included in error. See section 'Package
  structure' in the 'Writing R Extensions' manual.
• checking for portable file names ... OK
• checking whether package 'HumMeth27QCReport' can be installed ... WARNING
  Found the following significant warnings:
  Warning: 'IlluminaHumanMethylation450k.db' is deprecated.
  Warning: 'IlluminaHumanMethylation450k.db' is deprecated.
  Warning: 'IlluminaHumanMethylation450k.db' is deprecated.
  See http://www.r-project.org/nosvn/R.check/r-release-windows-ix86+x86_64/HumMeth27QCReport-00install.html for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking sizes of PDF files under 'inst/doc' ... OK
• checking installed files from 'inst/doc' ... OK
• checking examples ... WARNING
  Found the following significant warnings:
  
  Warning: 'IlluminaHumanMethylation450k.db' is deprecated.
  Deprecated functions may be defunct as soon as of the next release of
  R.
  See ?Deprecated.
• checking PDF version of manual ... OK
  WARNING: There were 2 warnings.
  NOTE: There was 1 note.
  See
  'd:/Rcompile/CRANpkg/local/3.0/HumMeth27QCReport.Rcheck/00check.log'
  for details.