• using R version 2.15.0 (2012-03-30)
  • using platform: x86_64-pc-mingw32 (64-bit)
  • using session charset: ISO8859-1
  • checking for file 'BMS/DESCRIPTION' ... OK
  • checking extension type ... Package
  • this is package 'BMS' version '0.3.0'
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... NOTE
    As from R 2.14.0 all packages need a namespace.
    One will be generated on installation, but it is better to handcraft a
    NAMESPACE file: R CMD build will produce a suitable starting point.
    CRAN requires a NAMESPACE file for all submissions.
  • checking whether package 'BMS' can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • loading checks for arch 'i386'
    ** checking whether the package can be loaded ... OK
    ** checking whether the package can be loaded with stated dependencies ... OK
    ** checking whether the package can be unloaded cleanly ... OK
  • loading checks for arch 'x64'
    ** checking whether the package can be loaded ... OK
    ** checking whether the package can be loaded with stated dependencies ... OK
    ** checking whether the package can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    .addup.enum: no visible binding for global variable 'pmpold'
    .addup.enum: no visible binding for global variable 'lprobold'
    .addup.enum: no visible binding for global variable 'null.lik'
    .addup.enum: no visible binding for '<<-' assignment to 'inccount'
    .addup.enum: no visible binding for global variable 'inccount'
    .addup.enum: no visible binding for global variable 'molddraw'
    .addup.enum: no visible binding for '<<-' assignment to 'msize'
    .addup.enum: no visible binding for global variable 'msize'
    .addup.enum: no visible binding for global variable 'kold'
    .addup.enum: no visible binding for '<<-' assignment to 'cumsumweights'
    .addup.enum: no visible binding for global variable 'cumsumweights'
    .addup.enum: no visible binding for global variable 'position'
    .addup.enum: no visible binding for global variable 'K'
    .addup.enum: no visible binding for global variable 'b1'
    .addup.enum: no visible binding for global variable 'b2'
    .addup.enum: no visible binding for '<<-' assignment to 'bmo'
    .addup.enum: no visible binding for global variable 'bmo'
    .addup.enum: no visible binding for '<<-' assignment to 'null.count'
    .addup.enum: no visible binding for global variable 'null.count'
    .addup.enum.wotherstats: no visible binding for global variable
    'pmpold'
    .addup.enum.wotherstats: no visible binding for global variable
    'lprobold'
    .addup.enum.wotherstats: no visible binding for global variable
    'null.lik'
    .addup.enum.wotherstats: no visible binding for '<<-' assignment to
    'inccount'
    .addup.enum.wotherstats: no visible binding for global variable
    'inccount'
    .addup.enum.wotherstats: no visible binding for global variable
    'molddraw'
    .addup.enum.wotherstats: no visible binding for '<<-' assignment to
    'msize'
    .addup.enum.wotherstats: no visible binding for global variable 'msize'
    .addup.enum.wotherstats: no visible binding for global variable 'kold'
    .addup.enum.wotherstats: no visible binding for '<<-' assignment to
    'cumsumweights'
    .addup.enum.wotherstats: no visible binding for global variable
    'cumsumweights'
    .addup.enum.wotherstats: no visible binding for global variable
    'position'
    .addup.enum.wotherstats: no visible binding for global variable 'K'
    .addup.enum.wotherstats: no visible binding for global variable 'b1'
    .addup.enum.wotherstats: no visible binding for global variable 'b2'
    .addup.enum.wotherstats: no visible binding for '<<-' assignment to
    'bmo'
    .addup.enum.wotherstats: no visible binding for global variable 'bmo'
    .addup.enum.wotherstats: no visible binding for '<<-' assignment to
    'null.count'
    .addup.enum.wotherstats: no visible binding for global variable
    'null.count'
    .addup.enum.wotherstats: no visible binding for '<<-' assignment to
    'otherstats'
    .addup.enum.wotherstats: no visible binding for global variable
    'lik.list'
    .addup.enum.wotherstats: no visible binding for '<<-' assignment to
    'add.otherstats'
    .addup.enum.wotherstats: no visible binding for global variable
    'add.otherstats'
    .addup.enum.wotherstats: no visible binding for global variable
    'otherstats'
    .addup.mcmc: no visible binding for '<<-' assignment to 'inccount'
    .addup.mcmc: no visible binding for global variable 'inccount'
    .addup.mcmc: no visible binding for global variable 'molddraw'
    .addup.mcmc: no visible binding for '<<-' assignment to 'msize'
    .addup.mcmc: no visible binding for global variable 'msize'
    .addup.mcmc: no visible binding for global variable 'kold'
    .addup.mcmc: no visible binding for global variable 'position'
    .addup.mcmc: no visible binding for global variable 'K'
    .addup.mcmc: no visible binding for global variable 'b1'
    .addup.mcmc: no visible binding for global variable 'b2'
    .addup.mcmc: no visible binding for '<<-' assignment to 'bmo'
    .addup.mcmc: no visible binding for global variable 'bmo'
    .addup.mcmc: no visible binding for '<<-' assignment to 'null.count'
    .addup.mcmc: no visible binding for global variable 'null.count'
    .addup.mcmc.wotherstats: no visible binding for '<<-' assignment to
    'inccount'
    .addup.mcmc.wotherstats: no visible binding for global variable
    'inccount'
    .addup.mcmc.wotherstats: no visible binding for global variable
    'molddraw'
    .addup.mcmc.wotherstats: no visible binding for '<<-' assignment to
    'msize'
    .addup.mcmc.wotherstats: no visible binding for global variable 'msize'
    .addup.mcmc.wotherstats: no visible binding for global variable 'kold'
    .addup.mcmc.wotherstats: no visible binding for global variable
    'position'
    .addup.mcmc.wotherstats: no visible binding for global variable 'K'
    .addup.mcmc.wotherstats: no visible binding for global variable 'b1'
    .addup.mcmc.wotherstats: no visible binding for global variable 'b2'
    .addup.mcmc.wotherstats: no visible binding for '<<-' assignment to
    'bmo'
    .addup.mcmc.wotherstats: no visible binding for global variable 'bmo'
    .addup.mcmc.wotherstats: no visible binding for '<<-' assignment to
    'null.count'
    .addup.mcmc.wotherstats: no visible binding for global variable
    'null.count'
    .addup.mcmc.wotherstats: no visible binding for '<<-' assignment to
    'otherstats'
    .addup.mcmc.wotherstats: no visible binding for global variable
    'lik.list'
    .addup.mcmc.wotherstats: no visible binding for '<<-' assignment to
    'add.otherstats'
    .addup.mcmc.wotherstats: no visible binding for global variable
    'add.otherstats'
    .addup.mcmc.wotherstats: no visible binding for global variable
    'otherstats'
    image.bma: warning in
    strwidth(names(pipbounds)[which.max(nchar(names(pipbounds)))], unit =
    "inches"): partial argument match of 'unit' to 'units'
    plotComp: warning in
    strwidth(rownames(compMatrix)[which.max(nchar(rownames(compMatrix)))],
    unit = "inches", cex = cex.xaxis): partial argument match of 'unit'
    to 'units'
    plotComp: warning in axis(1, las = 2, at = 1:nrow(compMatrix), label =
    rownames(compMatrix), cex.axis = cex.xaxis): partial argument match
    of 'label' to 'labels'
    plotModelsize: warning in axis(1, las = 1, at = 1:length(ksubset),
    label = ksubset, cex.axis = eval(dotargs$cex.axis)): partial argument
    match of 'label' to 'labels'
    pred.density : calc_alldens: no visible binding for '<<-' assignment to
    'xf_index'
    pred.density : calc_alldens : <anonymous>: no visible binding for
    global variable 'xf_index'
    Found .Internal calls in the following functions:
    '.fls.samp' '.fls.samp.int' '.ols.terms2' '.rev.jump' '.rev.jump.int'
    'bms'
    with calls to .Internal functions
    'crossprod' 'runif' 'tcrossprod'

    Packages should not call .Internal(): it is not part of the API, for
    use only by R itself and subject to change without notice.
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of 'data' directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking for left-overs from vignette generation ... WARNING
    file 'inst/doc/Rplots.ps' will not be installed: please remove it
  • checking sizes of PDF files under 'inst/doc' ... OK
  • checking installed files from 'inst/doc' ... OK
  • checking examples ...
    ** running examples for arch 'i386' ... WARNING
    Found the following significant warnings:

    Warning: sd(<data.frame>) is deprecated.
    Warning: sd(<data.frame>) is deprecated.
    Warning: sd(<data.frame>) is deprecated.
    Warning: sd(<data.frame>) is deprecated.
    Warning: sd(<data.frame>) is deprecated.
    Warning: sd(<data.frame>) is deprecated.
    Warning: sd(<data.frame>) is deprecated.
    Warning: sd(<data.frame>) is deprecated.
    Warning: sd(<data.frame>) is deprecated.
    Deprecated functions may be defunct as soon as of the next release of
    R.
    See ?Deprecated.
    ** running examples for arch 'x64' ... WARNING
    Found the following significant warnings:

    Warning: sd(<data.frame>) is deprecated.
    Warning: sd(<data.frame>) is deprecated.
    Warning: sd(<data.frame>) is deprecated.
    Warning: sd(<data.frame>) is deprecated.
    Warning: sd(<data.frame>) is deprecated.
    Warning: sd(<data.frame>) is deprecated.
    Warning: sd(<data.frame>) is deprecated.
    Warning: sd(<data.frame>) is deprecated.
    Warning: sd(<data.frame>) is deprecated.
    Deprecated functions may be defunct as soon as of the next release of
    R.
    See ?Deprecated.
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in 'inst/doc' ... OK
  • checking running R code from vignettes ... OK
  • checking re-building of vignette PDFs ... OK
  • checking PDF version of manual ... OK
    WARNING: There were 3 warnings.
    NOTE: There were 2 notes.
    See
    'd:/Rcompile/CRANpkg/local/2.15/BMS.Rcheck/00check.log'
    for details.