- using R Under development (unstable) (2014-01-22 r64855)
- using platform: x86_64-apple-darwin10.8.0 (64-bit)
- using session charset: UTF-8
- checking for file ‘survival/DESCRIPTION’ ... OK
- this is package ‘survival’ version ‘2.37-7’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘survival’ can be installed ... [22s/27s] OK
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [3s/3s] OK
- checking for unstated dependencies in tests ... OK
- checking tests ... [52s/53s] OK

Running ‘aareg.R’ [1s/1s]

Comparing ‘aareg.Rout’ to ‘aareg.Rout.save’ ... OK

Running ‘anova.R’ [0s/0s]

Comparing ‘anova.Rout’ to ‘anova.Rout.save’ ... OK

Running ‘bladder.R’ [0s/0s]

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Running ‘book1.R’ [0s/0s]

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Running ‘book2.R’ [0s/1s]

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Running ‘book3.R’ [0s/0s]

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Running ‘book4.R’ [0s/0s]

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Running ‘book5.R’ [0s/0s]

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Running ‘book6.R’ [0s/0s]

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Running ‘book7.R’ [1s/1s]

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Running ‘cancer.R’ [0s/0s]

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Running ‘clogit.R’ [1s/1s]

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Running ‘concordance.R’ [1s/1s]

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Running ‘counting.R’ [0s/0s]

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Running ‘coxsurv.R’ [0s/0s]

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Running ‘coxsurv2.R’ [0s/0s]

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Running ‘coxsurv3.R’ [0s/0s]

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Running ‘coxsurv4.R’ [0s/0s]

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Running ‘detail.R’ [0s/0s]

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Running ‘difftest.R’ [0s/0s]

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Running ‘doaml.R’ [0s/0s]

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Running ‘doweight.R’ [0s/0s]

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Running ‘expected.R’ [1s/1s]

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Running ‘expected2.R’ [1s/1s]

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Running ‘factor.R’ [0s/0s]

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Running ‘factor2.R’ [0s/0s]

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Running ‘fr_cancer.R’ [0s/0s]

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Running ‘fr_kidney.R’ [1s/1s]

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Running ‘fr_lung.R’ [0s/0s]

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Running ‘fr_ovarian.R’ [0s/0s]

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Running ‘fr_rat1.R’ [0s/0s]

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Running ‘fr_rat2.R’ [0s/0s]

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Running ‘fr_resid.R’ [0s/0s]

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Running ‘fr_simple.R’ [0s/0s]

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Running ‘frailty.R’ [0s/0s]

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Running ‘frank.R’ [0s/0s]

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Running ‘infcox.R’ [0s/0s]

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Running ‘jasa.R’ [1s/1s]

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Running ‘model.matrix.R’ [0s/0s]

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Running ‘mrtest.R’ [0s/0s]

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Running ‘nested.R’ [0s/0s]

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Running ‘ovarian.R’ [0s/0s]

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Running ‘prednew.R’ [1s/1s]

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Running ‘pspline.R’ [0s/0s]

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Running ‘pyear.R’ [1s/1s]

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Running ‘quantile.R’ [0s/0s]

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Running ‘r_capacitor.R’ [0s/0s]

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Running ‘r_donnell.R’ [2s/2s]

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Running ‘r_lung.R’ [0s/0s]

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Running ‘r_peterson.R’ [0s/0s]

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Running ‘r_resid.R’ [0s/0s]

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Running ‘r_sas.R’ [7s/7s]

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Running ‘r_scale.R’ [0s/0s]

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Running ‘r_stanford.R’ [0s/0s]

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Running ‘r_strata.R’ [0s/0s]

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Running ‘r_tdist.R’ [0s/0s]

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Running ‘r_user.R’ [0s/0s]

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Running ‘ratetable.R’ [0s/0s]

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Running ‘rounding.R’ [0s/0s]

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Running ‘singtest.R’ [0s/0s]

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Running ‘strata2.R’ [0s/0s]

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Running ‘stratatest.R’ [0s/0s]

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Running ‘summary_survfit.R’ [0s/0s]

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Running ‘surv.R’ [0s/0s]

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Running ‘survfit2.R’ [0s/0s]

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Running ‘survreg2.R’ [1s/1s]

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Running ‘survtest.R’ [0s/0s]

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Running ‘testci.R’ [0s/0s]

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Running ‘testci2.R’ [0s/0s]

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Running ‘testnull.R’ [0s/0s]

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Running ‘testreg.R’ [0s/0s]

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Running ‘tiedtime.R’ [0s/0s]

Comparing ‘tiedtime.Rout’ to ‘tiedtime.Rout.save’ ... OK

Running ‘tt.R’ [10s/10s]

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Running ‘turnbull.R’ [0s/0s]

Comparing ‘turnbull.Rout’ to ‘turnbull.Rout.save’ ... OK - checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... [16s/16s] OK
- checking re-building of vignette outputs ... [20s/21s] OK
- checking PDF version of manual ... OK