• using R version 2.15.3 (2013-03-01)
• using platform: i386-apple-darwin9.8.0 (32-bit)
• using session charset: UTF-8
• checking for file ‘spcosa/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘spcosa’ version ‘0.3-3’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘spcosa’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... ERROR
  Running examples in ‘spcosa-Ex.R’ failed
  The error most likely occurred in:
  
  > ### Name: estimate-methods
  > ### Title: Estimating Statistics
  > ### Aliases: estimate-methods estimate
  > ### estimate,character,CompactStratification,SamplingPatternRandomSamplingUnits,data.frame-method
  > ### estimate,character,CompactStratificationEqualArea,SamplingPatternRandomComposite,data.frame-method
  > ### estimate,SamplingVariance,CompactStratification,SamplingPatternRandomSamplingUnits,data.frame-method
  > ### estimate,SamplingVariance,CompactStratificationEqualArea,SamplingPatternRandomComposite,data.frame-method
  > ### estimate,SpatialCumulativeDistributionFunction,CompactStratification,SamplingPatternRandomSamplingUnits,data.frame-method
  > ### estimate,SpatialMean,CompactStratification,SamplingPatternRandomSamplingUnits,data.frame-method
  > ### estimate,SpatialMean,CompactStratificationEqualArea,SamplingPatternRandomComposite,data.frame-method
  > ### estimate,SpatialVariance,CompactStratification,SamplingPatternRandomSamplingUnits,data.frame-method
  > ### estimate,StandardError,CompactStratification,SamplingPatternRandomSamplingUnits,data.frame-method
  > ### Keywords: methods
  >
  > ### ** Examples
  >
  >
  > # Note: the example below requires the 'rgdal'-package.
  > # You may consider the 'maptools'-package as an alternative
  > if (require(rgdal)) {
  + # read vector representation of the "Mijdrecht" area
  + shp <- readOGR(
  + dsn = system.file("maps", package = "spcosa"),
  + layer = "mijdrecht"
  + )
  +
  + # stratify into 30 strata
  + myStratification <- stratify(shp, nStrata = 30, nTry = 10, verbose = TRUE)
  +
  + # random sampling of two sampling units per stratum
  + mySamplingPattern <- spsample(myStratification, n = 2)
  +
  + # plot sampling pattern
  + plot(myStratification, mySamplingPattern)
  +
  + # simulate data
  + # (in real world cases these data have to be obtained by field work etc.)
  + myData <- as(mySamplingPattern, "data.frame")
  + myData$observation <- rnorm(n = nrow(myData), mean = 10, sd = 1)
  +
  + # design-based inference
  + estimate("spatial mean", myStratification, mySamplingPattern, myData["observation"])
  + estimate("sampling variance", myStratification, mySamplingPattern, myData["observation"])
  + estimate("standard error", myStratification, mySamplingPattern, myData["observation"])
  + estimate("spatial variance", myStratification, mySamplingPattern, myData["observation"])
  + estimate("scdf", myStratification, mySamplingPattern, myData["observation"])
  + }
  Loading required package: rgdal
  Loading required package: sp
  rgdal: version: 0.8-5, (SVN revision 449)
  Geospatial Data Abstraction Library extensions to R successfully loaded
  Loaded GDAL runtime: GDAL 1.9.0, released 2011/12/29
  Path to GDAL shared files: /Volumes/XT3/Rdev-web/QA/Simon/packages/leopard-universal/Rlib/2.15/rgdal/gdal
  Loaded PROJ.4 runtime: Rel. 4.8.0, 6 March 2012, [PJ_VERSION: 480]
  Path to PROJ.4 shared files: /Volumes/XT3/Rdev-web/QA/Simon/packages/leopard-universal/Rlib/2.15/rgdal/proj
  OGR data source with driver: ESRI Shapefile
  Source: "/Volumes/XT3/Rdev-web/QA/Simon/packages/leopard-universal/results/2.15/spcosa.Rcheck/spcosa/maps", layer: "mijdrecht"
  with 1 features and 2 fields
  Feature type: wkbPolygon with 2 dimensions
  Error in .jfindClass(o) : class not found
  Calls: stratify ... stratify -> stratify -> .local -> J -> .jrcall -> .jfindClass
  Execution halted
• elapsed time (check, wall clock): 0:57