• using R version 2.15.1 (2012-06-22)
• using platform: i386-apple-darwin9.8.0 (32-bit)
• using session charset: ASCII
• checking for file 'rspear/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'rspear' version '0.0.1'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package 'rspear' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under 'inst/doc' ... OK
• checking installed files from 'inst/doc' ... OK
• checking examples ... OK
• checking for unstated dependencies in tests ... OK
• checking tests ... OK
  Running 'run-all.R'
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... NOTE
  Error in re-building vignettes:
  ...
  Loading required package: rspear
  Loading required package: reshape2
  trying URL 'http://www.systemecology.eu/rspear/traits.csv'
  Content type 'text/csv' length 127504 bytes (124 Kb)
  opened URL
  ==================================================
  downloaded 124 Kb
  
  Warning in spear(spear_example, taxa = names(spear_example)[1], abundance = names(spear_example)[2], :
  There were unmatched species:
  xxxxxxxxx
  Set SPEAR to 0.
  Warning in spear(spear_example, taxa = names(spear_example)[1], abundance = names(spear_example)[2], :
  Non-direct taxon matches!
  Check trait table if match is appropiate!!
  Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
  Running 'texi2dvi' on 'rspear.tex' failed.
  LaTeX errors:
  check/vign_test/rspear/inst/doc/rspear.tex:19: LaTeX Error: Missing \begin{docu
  ment}.
  
  See the LaTeX manual or LaTeX Companion for explanation.
  Type H <return> for immediate help.
  Calls: buildVignettes -> texi2pdf -> texi2dvi
  Execution halted
  
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  '/Volumes/XT3/Rdev-web/QA/Simon/packages/leopard-universal/results/2.15/rspear.Rcheck/00check.log'
  for details.
• elapsed time (check, wall clock): 0:30