Check results for 'robCompositions'

using R version 2.14.0 RC (2011-10-24 r57417)
using platform: i386-apple-darwin9.8.0 (32-bit)
using session charset: ASCII
checking for file 'robCompositions/DESCRIPTION' ... OK
checking extension type ... Package
this is package 'robCompositions' version '1.5.0'
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking whether package 'robCompositions' can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
loading checks for arch 'x86_64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... NOTE
File 'robCompositions/R/zzz.R':
.onLoad calls:
cat("\n--------\n\n")
cat("for references have a look at\n")
cat("citation('robCompositions') \n")
cat("--------\n\n")

Package startup functions should use 'packageStartupMessage' to
generate messages.
See section 'Good practice' in ?.onAttach.

robGUI : boxObject: no visible global function definition for
'gtkHBoxNew'
robGUI : boxObject: no visible global function definition for
'gtkVBoxNew'
robGUI : align: no visible global function definition for
'gtkAlignmentNew'
robGUI : padding: no visible global function definition for
'gtkAlignmentNew'
robGUI: no visible global function definition for 'gtkWindowNew'
robGUI: no visible global function definition for 'gtkFrameNew'
robGUI: no visible global function definition for 'gtkComboBoxNewText'
robGUI: no visible global function definition for 'gtkLabelNew'
robGUI: no visible global function definition for 'gtkEntryNew'
robGUI: no visible global function definition for
'gtkRadioButtonNewWithLabel'
robGUI: no visible global function definition for
'gtkButtonNewWithLabel'
robGUI: no visible global function definition for
'gtkComboBoxEntryNewText'
robGUI: no visible global function definition for 'gSignalConnect'
robGUI : browseInputSignal: no visible global function definition for
'gtkFileChooserDialogNew'
robGUI : browseInputSignal: no visible binding for global variable
'GtkResponseType'
robGUI : browseInput2Signal: no visible global function definition for
'gtkFileChooserDialogNew'
robGUI : browseInput2Signal: no visible binding for global variable
'GtkResponseType'
robGUI : browseOutputSignal: no visible global function definition for
'gtkFileChooserDialogNew'
robGUI : browseOutputSignal: no visible binding for global variable
'GtkResponseType'
robGUI : error: no visible global function definition for
'gtkMessageDialog'
robGUI: no visible global function definition for 'gtkMenuBarNew'
robGUI: no visible global function definition for
'gtkMenuItemNewWithLabel'
robGUI: no visible global function definition for 'gtkMenuNew'
robGUI : saveClicked: no visible global function definition for
'gtkFileChooserDialogNew'
robGUI : saveClicked: no visible binding for global variable
'GtkResponseType'
robGUI : loadClicked: no visible global function definition for
'gtkFileChooserDialogNew'
robGUI : loadClicked: no visible binding for global variable
'GtkResponseType'
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... NOTE
Package(s) unavailable to check Rd xrefs: 'StatDA'
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of 'data' directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking compiled code ... OK
checking sizes of PDF files under 'inst/doc' ... NOTE
'qpdf' made some significant size reductions:
compacted 'imputation.pdf' from 416Kb to 267Kb
consider running tools::compactPDF() on these files
checking examples ...
** running examples for arch 'i386' ... WARNING
Found the following significant warnings:

Warning: mean(<data.frame>) is deprecated.
Warning: mean(<data.frame>) is deprecated.
Warning: mean(<data.frame>) is deprecated.
Warning: mean(<data.frame>) is deprecated.
Warning: mean(<data.frame>) is deprecated.
Warning: mean(<data.frame>) is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
** running examples for arch 'x86_64' ... WARNING
Found the following significant warnings:

Warning: mean(<data.frame>) is deprecated.
Warning: mean(<data.frame>) is deprecated.
Warning: mean(<data.frame>) is deprecated.
Warning: mean(<data.frame>) is deprecated.
Warning: mean(<data.frame>) is deprecated.
Warning: mean(<data.frame>) is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
checking for unstated dependencies in tests ... OK
checking tests ...
** running tests for arch 'i386' OK
Running 'rz.R'
** running tests for arch 'x86_64' OK
Running 'rz.R'
checking for unstated dependencies in vignettes ... OK
checking package vignettes in 'inst/doc' ... OK
checking running R code from vignettes ... OK
checking re-building of vignette PDFs ... OK
checking PDF version of manual ... OK
WARNING: There were 2 warnings, see
'/Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.14/robCompositions.Rcheck/00check.log'
for details
elapsed time (check, wall clock): 1:12