• using R version 2.10.1 Patched (2010-01-07 r50940)
  • using session charset: ASCII
  • checking for file 'rggobi/DESCRIPTION' ... OK
  • this is package 'rggobi' version '2.1.14'
  • checking package name space information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking for executable files ... OK
  • checking whether package 'rggobi' can be installed ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the name space can be loaded with stated dependencies ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    edges<-.GGobi: no visible global function definition for 'nodes'
    edges<-.GGobi: no visible global function definition for 'edgeMatrix'
    edges<-.GGobiData: no visible global function definition for 'nodes'
    edges<-.GGobiData: no visible global function definition for
    'edgeMatrix'
    ggobi_pcp: no visible binding for global variable 'CASEID'
  • checking Rd files ... NOTE
    prepare_Rd: GGobiCall-n1.rd:33: Dropping empty section \examples
    prepare_Rd: as-RGtkObject-8g.rd:14: Dropping empty section \details
    prepare_Rd: as-RGtkObject-8g.rd:16: Dropping empty section \examples
    prepare_Rd: as-data-frame-GGobiData-10.rd:16: Dropping empty section \details
    prepare_Rd: as-data-frame-GGobiData-10.rd:18: Dropping empty section \examples
    prepare_Rd: check-versions-qe.rd:10-12: Dropping empty section \arguments
    prepare_Rd: check-versions-qe.rd:14: Dropping empty section \details
    prepare_Rd: check-versions-qe.rd:16: Dropping empty section \examples
    prepare_Rd: clean-ggobi-bw.rd:17: Dropping empty section \examples
    prepare_Rd: close-GGobiDisplay-3v.rd:15: Dropping empty section \details
    prepare_Rd: colorscheme-6n.rd:14: Dropping empty section \details
    prepare_Rd: connecting-edges-cn.rd:15: Dropping empty section \details
    prepare_Rd: connecting-edges-cn.rd:17: Dropping empty section \examples
    prepare_Rd: dataset-numeric-h2.rd:21: Dropping empty section \examples
    prepare_Rd: dataset-up.rd:15: Dropping empty section \details
    prepare_Rd: dataset-up.rd:17: Dropping empty section \examples
    prepare_Rd: dim-GGobiData-9t.rd:14: Dropping empty section \details
    prepare_Rd: dimnames---GGobiData-ds.rd:15: Dropping empty section \details
    prepare_Rd: dimnames---GGobiData-ds.rd:17: Dropping empty section \examples
    prepare_Rd: dimnames-GGobiData-ib.rd:14: Dropping empty section \details
    prepare_Rd: dimnames-GGobiData-ib.rd:16: Dropping empty section \examples
    prepare_Rd: display-ce.rd:15: Dropping empty section \details
    prepare_Rd: display-ce.rd:17: Dropping empty section \examples
    prepare_Rd: displays-kj.rd:14: Dropping empty section \details
    prepare_Rd: displays-kj.rd:16: Dropping empty section \examples
    prepare_Rd: edges---GGobi-b7.rd:15: Dropping empty section \details
    prepare_Rd: edges---GGobi-b7.rd:17: Dropping empty section \examples
    prepare_Rd: edges---GGobiDisplay-1y.rd:18: Dropping empty section \examples
    prepare_Rd: edges--p8.rd:15: Dropping empty section \details
    prepare_Rd: edges--p8.rd:17: Dropping empty section \examples
    prepare_Rd: edges-lk.rd:14: Dropping empty section \details
    prepare_Rd: edges-lk.rd:16: Dropping empty section \examples
    prepare_Rd: excluded---GGobiData-3z.rd:17: Dropping empty section \examples
    prepare_Rd: excluded-54.rd:15: Dropping empty section \details
    prepare_Rd: excluded-54.rd:17: Dropping empty section \examples
    prepare_Rd: excluded-GGobiData-5p.rd:16: Dropping empty section \examples
    prepare_Rd: ggobi-GGobiDisplay-zb.rd:15: Dropping empty section \details
    prepare_Rd: ggobi-GGobiDisplay-zb.rd:17: Dropping empty section \examples
    prepare_Rd: ggobi-check-structs-qq.rd:10-12: Dropping empty section \arguments
    prepare_Rd: ggobi-check-structs-qq.rd:27: Dropping empty section \examples
    prepare_Rd: ggobi-count-bo.rd:10-12: Dropping empty section \arguments
    prepare_Rd: ggobi-data-add-variable-o9.rd:18: Dropping empty section \details
    prepare_Rd: ggobi-data-add-variable-o9.rd:20: Dropping empty section \examples
    prepare_Rd: ggobi-data-remove-variable-36.rd:15: Dropping empty section \details
    prepare_Rd: ggobi-data-remove-variable-36.rd:17: Dropping empty section \examples
    prepare_Rd: ggobi-data-set-variable-43.rd:17: Dropping empty section \details
    prepare_Rd: ggobi-data-set-variable-43.rd:19: Dropping empty section \examples
    prepare_Rd: ggobi-display-make-type-3r.rd:14: Dropping empty section \details
    prepare_Rd: ggobi-display-make-type-3r.rd:16: Dropping empty section \examples
    prepare_Rd: ggobi-display-types-9g.rd:14: Dropping empty section \details
    prepare_Rd: ggobi-display-types-9g.rd:16: Dropping empty section \examples
    prepare_Rd: ggobi-find-file-fe.rd:15: Dropping empty section \details
    prepare_Rd: ggobi-gtk-main-window-c4.rd:17: Dropping empty section \examples
    prepare_Rd: ggobi-gtk-menu-bar-j4.rd:17: Dropping empty section \examples
    prepare_Rd: ggobi-pcp-c7.rd:17: Dropping empty section \examples
    prepare_Rd: ggobi-set-data-file-be.rd:17: Dropping empty section \details
    prepare_Rd: ggobi-set-data-file-be.rd:19: Dropping empty section \examples
    prepare_Rd: ggobi-set-data-frame-k0.rd:18: Dropping empty section \details
    prepare_Rd: ggobi-set-data-frame-k0.rd:20: Dropping empty section \examples
    prepare_Rd: ggobi-symbol-34.rd:18: Dropping empty section \examples
    prepare_Rd: ggobi-version-ao.rd:10-12: Dropping empty section \arguments
    prepare_Rd: glyph-colour---GGobiData-u7.rd:17: Dropping empty section \details
    prepare_Rd: glyph-colour---GGobiData-u7.rd:19: Dropping empty section \examples
    prepare_Rd: glyph-colour-GGobiData-fz.rd:16: Dropping empty section \details
    prepare_Rd: glyph-colour-GGobiData-fz.rd:18: Dropping empty section \examples
    prepare_Rd: glyph-size---GGobiData-c8.rd:18: Dropping empty section \examples
    prepare_Rd: glyph-size-GGobiData-3t.rd:17: Dropping empty section \examples
    prepare_Rd: glyph-type---GGobiData-2r.rd:16: Dropping empty section \details
    prepare_Rd: glyph-type---GGobiData-2r.rd:18: Dropping empty section \examples
    prepare_Rd: glyph-type-GGobiData-2i.rd:27: Dropping empty section \examples
    prepare_Rd: ids---GGobiData-mw.rd:16: Dropping empty section \details
    prepare_Rd: ids---GGobiData-mw.rd:18: Dropping empty section \examples
    prepare_Rd: ids-GGobiData-2v.rd:15: Dropping empty section \details
    prepare_Rd: ids-GGobiData-2v.rd:17: Dropping empty section \examples
    prepare_Rd: length-GGobiDisplay-a1.rd:14: Dropping empty section \details
    prepare_Rd: length-GGobiDisplay-a1.rd:16: Dropping empty section \examples
    prepare_Rd: mapGlyphType-5p.rd:14: Dropping empty section \details
    prepare_Rd: mapGlyphType-5p.rd:16: Dropping empty section \examples
    prepare_Rd: names---GGobiData-ga.rd:15: Dropping empty section \details
    prepare_Rd: names---GGobiData-ga.rd:17: Dropping empty section \examples
    prepare_Rd: names-GGobi-ol.rd:14: Dropping empty section \details
    prepare_Rd: names-GGobiData-c0.rd:15: Dropping empty section \details
    prepare_Rd: names-GGobiData-c0.rd:17: Dropping empty section \examples
    prepare_Rd: ncol-GGobiData-fi.rd:14: Dropping empty section \details
    prepare_Rd: ncol-GGobiData-fi.rd:16: Dropping empty section \examples
    prepare_Rd: nrow-GGobiData-om.rd:14: Dropping empty section \details
    prepare_Rd: nrow-GGobiData-om.rd:16: Dropping empty section \examples
    prepare_Rd: pmodes-tc.rd:24: Dropping empty section \examples
    prepare_Rd: print-GGobi-b6.rd:15: Dropping empty section \details
    prepare_Rd: print-GGobi-b6.rd:17: Dropping empty section \examples
    prepare_Rd: print-GGobiData-7s.rd:18: Dropping empty section \examples
    prepare_Rd: print-GGobiDisplay-o0.rd:15: Dropping empty section \details
    prepare_Rd: print-GGobiDisplay-o0.rd:17: Dropping empty section \examples
    prepare_Rd: rownames---GGobiData-2d.rd:15: Dropping empty section \details
    prepare_Rd: rownames-GGobiData-n8.rd:15: Dropping empty section \details
    prepare_Rd: rownames-GGobiData-n8.rd:17: Dropping empty section \examples
    prepare_Rd: selected-GGobiData-xv.rd:16: Dropping empty section \details
    prepare_Rd: selected-GGobiData-xv.rd:18: Dropping empty section \examples
    prepare_Rd: shadowed---GGobiData-h7.rd:19: Dropping empty section \examples
    prepare_Rd: shadowed-GGobiData-8a.rd:18: Dropping empty section \examples
    prepare_Rd: summary-GGobi-c4.rd:15: Dropping empty section \details
    prepare_Rd: summary-GGobiData-wb.rd:15: Dropping empty section \details
    prepare_Rd: summary-GGobiData-wb.rd:17: Dropping empty section \examples
    prepare_Rd: variable-index-h9.rd:15: Dropping empty section \details
    prepare_Rd: variable-index-h9.rd:17: Dropping empty section \examples
    prepare_Rd: variables--hh.rd:15: Dropping empty section \details
    prepare_Rd: variables--hh.rd:17: Dropping empty section \examples
    prepare_Rd: variables-GGobiDisplay-zm.rd:22: Dropping empty section \examples
    prepare_Rd: variables-cf.rd:14: Dropping empty section \details
    prepare_Rd: variables-cf.rd:16: Dropping empty section \examples
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking data for non-ASCII characters ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking for portable compilation flags in Makevars ... OK
  • checking for portable use of $BLAS_LIBS ... OK
  • checking examples ... OK
  • elapsed time (check, wall clock): 0:54