• using R version 2.15.2 (2012-10-26)
• using platform: i386-apple-darwin9.8.0 (32-bit)
• using session charset: ASCII
• checking for file 'rgenoud/DESCRIPTION' ... OK
• this is package 'rgenoud' version '5.7-8.1'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package 'rgenoud' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch 'i386'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
  ** checking loading without being on the library search path ... OK
• loading checks for arch 'x86_64'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
  ** checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  genoud : fnLexicalSort: no visible binding for global variable 'indx'
  genoud: multiple local function definitions for 'fn1.bfgs' with
  different formal arguments
  genoud: multiple local function definitions for 'gr1' with different
  formal arguments
  genoud: multiple local function definitions for 'hess.fn' with
  different formal arguments
  genoud_transform : fnLexicalSort: no visible binding for global
  variable 'indx'
  genoud_transform: multiple local function definitions for 'fn1.bfgs'
  with different formal arguments
  genoud_transform: multiple local function definitions for 'gr1' with
  different formal arguments
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under 'inst/doc' ... OK
• checking installed files from 'inst/doc' ... OK
• checking examples ...
  ** running examples for arch 'i386' ... OK
  ** running examples for arch 'x86_64' ... OK
• checking for unstated dependencies in tests ... OK
• checking tests ...
  ** running tests for arch 'i386' OK
  Running 'tests.R'
  Comparing 'tests.Rout' to 'tests.Rout.save' ...4c4
  < ## rgenoud (Version 5.7-8.1, Build Date: 2012-06-03)
  ---
  > ## rgenoud (Version 5.7-8, Build Date: 2012-06-03)
  17c17
  < Sat Feb 9 03:50:34 2013
  ---
  > Sun Jun 3 12:21:44 2012
  175c175
  < Sat Feb 9 03:50:36 2013
  ---
  > Sun Jun 3 12:21:46 2012
  204c204
  < Sat Feb 9 03:50:36 2013
  ---
  > Sun Jun 3 12:21:46 2012
  362,363c362,363
  < Sat Feb 9 03:50:37 2013
  < Total run time : 0 hours 0 minutes and 1 seconds
  ---
  > Sun Jun 3 12:21:48 2012
  > Total run time : 0 hours 0 minutes and 2 seconds
  398c398
  < Sat Feb 9 03:50:37 2013
  ---
  > Sun Jun 3 12:21:48 2012
  556,557c556,557
  < Sat Feb 9 03:50:40 2013
  < Total run time : 0 hours 0 minutes and 3 seconds
  ---
  > Sun Jun 3 12:21:50 2012
  > Total run time : 0 hours 0 minutes and 2 seconds
  606c606
  < Sat Feb 9 03:50:40 2013
  ---
  > Sun Jun 3 12:21:50 2012
  828,829c828,829
  < Sat Feb 9 03:50:49 2013
  < Total run time : 0 hours 0 minutes and 9 seconds
  ---
  > Sun Jun 3 12:21:57 2012
  > Total run time : 0 hours 0 minutes and 7 seconds
  ** running tests for arch 'x86_64' OK
  Running 'tests.R'
  Comparing 'tests.Rout' to 'tests.Rout.save' ...4c4
  < ## rgenoud (Version 5.7-8.1, Build Date: 2012-06-03)
  ---
  > ## rgenoud (Version 5.7-8, Build Date: 2012-06-03)
  17c17
  < Sat Feb 9 03:50:50 2013
  ---
  > Sun Jun 3 12:21:44 2012
  175c175
  < Sat Feb 9 03:50:52 2013
  ---
  > Sun Jun 3 12:21:46 2012
  204c204
  < Sat Feb 9 03:50:52 2013
  ---
  > Sun Jun 3 12:21:46 2012
  362c362
  < Sat Feb 9 03:50:54 2013
  ---
  > Sun Jun 3 12:21:48 2012
  398c398
  < Sat Feb 9 03:50:54 2013
  ---
  > Sun Jun 3 12:21:48 2012
  556c556
  < Sat Feb 9 03:50:56 2013
  ---
  > Sun Jun 3 12:21:50 2012
  606c606
  < Sat Feb 9 03:50:56 2013
  ---
  > Sun Jun 3 12:21:50 2012
  828,829c828,829
  < Sat Feb 9 03:51:05 2013
  < Total run time : 0 hours 0 minutes and 9 seconds
  ---
  > Sun Jun 3 12:21:57 2012
  > Total run time : 0 hours 0 minutes and 7 seconds
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  '/Volumes/XT3/Rdev-web/QA/Simon/packages/leopard-universal/results/2.15/rgenoud.Rcheck/00check.log'
  for details.
• elapsed time (check, wall clock): 1:54