• using R version 2.10.0 beta (2009-10-12 r50045)
  • using session charset: ASCII
  • checking for file 'popgen/DESCRIPTION' ... OK
  • this is package 'popgen' version '0.0-4'
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking for executable files ... OK
  • checking whether package 'popgen' can be installed ... WARNING
    Found the following significant warnings:
    Warning: ./man/nps.Rd:32: unknown macro '\arrowvert'
    Warning: ./man/nps.Rd:32: unknown macro '\arrowvert'
    Warning: ./man/nps.Rd:33: unknown macro '\begin'
    Warning: ./man/nps.Rd:34: unknown macro '\sum'
    Warning: ./man/nps.Rd:34: unknown macro '\in'
    Warning: ./man/nps.Rd:35: unknown macro '\end'
    Warning: ./man/nps.Rd:37: unknown macro '\begin'
    Warning: ./man/nps.Rd:38: unknown macro '\sum'
    Warning: ./man/nps.Rd:38: unknown macro '\frac'
    Warning: ./man/nps.Rd:39: unknown macro '\end'
    Warning: ./man/nps.Rd:41: unknown macro '\begin'
    Warning: ./man/nps.Rd:42: unknown macro '\textrm'
    Warning: ./man/nps.Rd:42: unknown macro '\bf'
    Warning: ./man/nps.Rd:42: unknown macro '\big'
    Warning: ./man/nps.Rd:42: unknown macro '\log'
    Warning: ./man/nps.Rd:42: unknown macro '\big'
    Warning: ./man/nps.Rd:42: unknown macro '\log'
    Warning: ./man/nps.Rd:43: unknown macro '\end'
    Warning: ./man/nps.Rd:44: unknown macro '\bf'
    Warning: ./man/nps.Rd:44: unknown macro '\hat'
    Warning: ./man/nps.Rd:44: unknown macro '\textrm'
    Warning: ./man/nps.Rd:46: unknown macro '\subsection'
    Warning: ./man/nps.Rd:46: unknown macro '\label'
    Warning: ./man/nps.Rd:47: unknown macro '\begin'
    Warning: ./man/nps.Rd:48: unknown macro '\item'
    Warning: ./man/nps.Rd:49: unknown macro '\item'
    Warning: ./man/nps.Rd:50: unknown macro '\begin'
    Warning: ./man/nps.Rd:51: unknown macro '\sum'
    Warning: ./man/nps.Rd:51: unknown macro '\log'
    Warning: ./man/nps.Rd:52: unknown macro '\sqrt'
    Warning: ./man/nps.Rd:52: unknown macro '\sum'
    Warning: ./man/nps.Rd:52: unknown macro '\log'
    Warning: ./man/nps.Rd:53: unknown macro '\end'
    Warning: ./man/nps.Rd:54: unknown macro '\item'
    Warning: ./man/nps.Rd:55: unknown macro '\begin'
    Warning: ./man/nps.Rd:56: unknown macro '\textrm'
    Warning: ./man/nps.Rd:56: unknown macro '\log'
    Warning: ./man/nps.Rd:57: unknown macro '\end'
    Warning: ./man/nps.Rd:59: unknown macro '\begin'
    Warning: ./man/nps.Rd:60: unknown macro '\sqrt'
    Warning: ./man/nps.Rd:61: unknown macro '\end'
    Warning: ./man/nps.Rd:62: unknown macro '\sqrt'
    Warning: ./man/nps.Rd:62: unknown macro '\bf'
    Warning: ./man/nps.Rd:62: unknown macro '\big'
    Warning: ./man/nps.Rd:62: unknown macro '\log'
    Warning: ./man/nps.Rd:62: unknown macro '\big'
    Warning: ./man/nps.Rd:63: unknown macro '\begin'
    Warning: ./man/nps.Rd:64: unknown macro '\hat'
    Warning: ./man/nps.Rd:64: unknown macro '\textrm'
    Warning: ./man/nps.Rd:64: unknown macro '\textrm'
    Warning: ./man/nps.Rd:64: unknown macro '\geq'
    Warning: ./man/nps.Rd:64: unknown macro '\textrm'
    Warning: ./man/nps.Rd:65: unknown macro '\end'
    Warning: ./man/nps.Rd:66: unknown macro '\end'
    Warning: ./man/nps.Rd:72: unknown macro '\subsection'
    Warning: ./man/popdiv.Rd:161: unexpected '}'
    See http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/popgen-00install.html for details.
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking for unstated dependencies in R code ... WARNING
    'library' or 'require' calls not declared from:
    cluster
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... OK
  • checking Rd files ... WARNING
    prepare_Rd: nps.Rd:32: unknown macro '\arrowvert'
    prepare_Rd: nps.Rd:33: unknown macro '\begin'
    prepare_Rd: nps.Rd:34: unknown macro '\sum'
    prepare_Rd: nps.Rd:34: unknown macro '\in'
    prepare_Rd: nps.Rd:35: unknown macro '\end'
    prepare_Rd: nps.Rd:37: unknown macro '\begin'
    prepare_Rd: nps.Rd:38: unknown macro '\sum'
    prepare_Rd: nps.Rd:38: unknown macro '\frac'
    prepare_Rd: nps.Rd:39: unknown macro '\end'
    prepare_Rd: nps.Rd:41: unknown macro '\begin'
    prepare_Rd: nps.Rd:42: unknown macro '\textrm'
    prepare_Rd: nps.Rd:42: unknown macro '\bf'
    prepare_Rd: nps.Rd:42: unknown macro '\big'
    prepare_Rd: nps.Rd:42: unknown macro '\log'
    prepare_Rd: nps.Rd:43: unknown macro '\end'
    prepare_Rd: nps.Rd:44: unknown macro '\bf'
    prepare_Rd: nps.Rd:44: unknown macro '\hat'
    prepare_Rd: nps.Rd:44: unknown macro '\textrm'
    prepare_Rd: nps.Rd:46: unknown macro '\subsection'
    prepare_Rd: nps.Rd:46: unknown macro '\label'
    prepare_Rd: nps.Rd:47: unknown macro '\begin'
    prepare_Rd: nps.Rd:48: unknown macro '\item'
    prepare_Rd: nps.Rd:49: unknown macro '\item'
    prepare_Rd: nps.Rd:50: unknown macro '\begin'
    prepare_Rd: nps.Rd:51: unknown macro '\sum'
    prepare_Rd: nps.Rd:51: unknown macro '\log'
    prepare_Rd: nps.Rd:52: unknown macro '\sqrt'
    prepare_Rd: nps.Rd:52: unknown macro '\sum'
    prepare_Rd: nps.Rd:52: unknown macro '\log'
    prepare_Rd: nps.Rd:53: unknown macro '\end'
    prepare_Rd: nps.Rd:54: unknown macro '\item'
    prepare_Rd: nps.Rd:55: unknown macro '\begin'
    prepare_Rd: nps.Rd:56: unknown macro '\textrm'
    prepare_Rd: nps.Rd:56: unknown macro '\log'
    prepare_Rd: nps.Rd:57: unknown macro '\end'
    prepare_Rd: nps.Rd:59: unknown macro '\begin'
    prepare_Rd: nps.Rd:60: unknown macro '\sqrt'
    prepare_Rd: nps.Rd:61: unknown macro '\end'
    prepare_Rd: nps.Rd:62: unknown macro '\sqrt'
    prepare_Rd: nps.Rd:62: unknown macro '\bf'
    prepare_Rd: nps.Rd:62: unknown macro '\big'
    prepare_Rd: nps.Rd:62: unknown macro '\log'
    prepare_Rd: nps.Rd:63: unknown macro '\begin'
    prepare_Rd: nps.Rd:64: unknown macro '\hat'
    prepare_Rd: nps.Rd:64: unknown macro '\textrm'
    prepare_Rd: nps.Rd:64: unknown macro '\geq'
    prepare_Rd: nps.Rd:65: unknown macro '\end'
    prepare_Rd: nps.Rd:66: unknown macro '\end'
    prepare_Rd: nps.Rd:72: unknown macro '\subsection'
    prepare_Rd: popdiv.Rd:161: unexpected '}'
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking for portable use of $BLAS_LIBS ... OK
  • checking examples ... OK
  • checking PDF version of manual ... OK
  • elapsed time (check, wall clock): 1:06