• using R version 2.8.0 (2008-10-20)
  • using session charset: ASCII
  • checking for file 'pomp/DESCRIPTION' ... OK
    •
  • checking extension type ... Package
  • this is package 'pomp' version '0.21-3'
  • checking package name space information ... OK
    •
  • checking package dependencies ... OK
    •
  • checking if this is a source package ... OK
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  • checking for executable files ... OK
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  • checking whether package 'pomp' can be installed ... OK
    •
  • checking package directory ... OK
    •
  • checking for portable file names ... OK
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  • checking for sufficient/correct file permissions ... OK
    •
  • checking DESCRIPTION meta-information ... OK
    •
  • checking top-level files ... OK
    •
  • checking index information ... OK
    •
  • checking package subdirectories ... OK
    •
  • checking R files for non-ASCII characters ... OK
    •
  • checking R files for syntax errors ... OK
    •
  • checking whether the package can be loaded ... OK
    •
  • checking whether the package can be loaded with stated dependencies ... OK
    •
  • checking whether the name space can be loaded with stated dependencies ... OK
    •
  • checking for unstated dependencies in R code ... OK
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  • checking S3 generic/method consistency ... OK
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  • checking replacement functions ... OK
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  • checking foreign function calls ... OK
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  • checking R code for possible problems ... NOTE
    plot,pomp: no visible binding for global variable 'y'
  • checking Rd files ... OK
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  • checking Rd cross-references ... OK
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  • checking for missing documentation entries ... OK
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  • checking for code/documentation mismatches ... OK
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  • checking Rd \usage sections ... OK
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  • checking data for non-ASCII characters ... OK
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  • checking line endings in C/C++/Fortran sources/headers ... OK
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  • checking line endings in Makefiles ... OK
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  • checking for portable use of $BLAS_LIBS ... OK
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  • creating pomp-Ex.R ... OK
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  • checking examples ... OK
    •
  • checking tests ... ERROR
    Running the tests in 'tests/examples.R' failed.
    Last 13 lines of output:
    + }
    gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c sir.c -o sir.o
    sir.c:7: warning: 'expit' defined but not used
    sir.c:11: warning: 'logit' defined but not used
    sir.c:16: warning: 'term_time' defined but not used
    gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -mmacosx-version-min=10.4 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o sir_example.so sir.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
    Error in dyn.load("sir_example.so") :
    unable to load shared library '/Builds/Rdev-web/QA/Simon/packages/tiger-universal/results/2.8/pomp.Rcheck/tests/sir_example.so':
    dlopen(/Builds/Rdev-web/QA/Simon/packages/tiger-universal/results/2.8/pomp.Rcheck/tests/sir_example.so, 6): Symbol not found: _reulermultinom
    Referenced from: /Builds/Rdev-web/QA/Simon/packages/tiger-universal/results/2.8/pomp.Rcheck/tests/sir_example.so
    Expected in: dynamic lookup
    Calls: source -> eval.with.vis -> eval.with.vis -> dyn.load
    Execution halted
  • elapsed time (check, wall clock): 0:46