• using R version 2.15.3 Patched (2013-03-13 r62287)
• using platform: i386-apple-darwin9.8.0 (32-bit)
• using session charset: UTF-8
• checking for file ‘mpMap/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘mpMap’ version ‘1.14’
• checking package namespace information ... OK
• checking package dependencies ... NOTE
  Packages suggested but not available for checking:
  ‘asreml’ ‘happy.hbrem’ ‘Heatplus’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘mpMap’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch ‘i386’
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
  ** checking loading without being on the library search path ... OK
• loading checks for arch ‘x86_64’
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
  ** checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... NOTE
  Foreign function call with ‘PACKAGE’ argument in a different package:
  .C("R_reorgRIgenoprob", ..., PACKAGE = "qtl")
  See the chapter ‘System and foreign language interfaces’ of the
  ‘Writing R Extensions’ manual.
• checking R code for possible problems ... NOTE
  mpprob: no visible global function definition for ‘happy’
  mpprob: no visible global function definition for ‘hdesign’
  plot.mpcross: no visible global function definition for ‘heatmap_2’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... NOTE
  Package(s) unavailable to check Rd xrefs: ‘Heatplus’
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ...
  ** running examples for arch ‘i386’ ... ERROR
  Running examples in ‘mpMap-Ex.R’ failed
  The error most likely occurred in:
  
  > ### Name: mpestrf
  > ### Title: Estimate pairwise recombination fractions between markers
  > ### Aliases: mpestrf
  >
  > ### ** Examples
  >
  > map <- sim.map(len=100, n.mar=11, eq.spacing=TRUE, include.x=FALSE)
  > sim.ped <- sim.mpped(4, 1, 500, 6, 1)
  > sim.dat <- sim.mpcross(map=map, pedigree=sim.ped, qtl=matrix(data=c(1, 50, .4, 0, 0, 0), nrow=1, ncol=6, byrow=TRUE), seed=1)
  > dat.rf <- mpestrf(sim.dat)
  > plot(dat.rf)
  Loading required package: Heatplus
  Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
  there is no package called ‘Heatplus’
  Error in plot.mpcross(dat.rf) : could not find function "heatmap_2"
  Calls: plot -> plot -> plot.mpcross
  Execution halted
  ** running examples for arch ‘x86_64’ ... ERROR
  Running examples in ‘mpMap-Ex.R’ failed
  The error most likely occurred in:
  
  > ### Name: mpestrf
  > ### Title: Estimate pairwise recombination fractions between markers
  > ### Aliases: mpestrf
  >
  > ### ** Examples
  >
  > map <- sim.map(len=100, n.mar=11, eq.spacing=TRUE, include.x=FALSE)
  > sim.ped <- sim.mpped(4, 1, 500, 6, 1)
  > sim.dat <- sim.mpcross(map=map, pedigree=sim.ped, qtl=matrix(data=c(1, 50, .4, 0, 0, 0), nrow=1, ncol=6, byrow=TRUE), seed=1)
  > dat.rf <- mpestrf(sim.dat)
  > plot(dat.rf)
  Loading required package: Heatplus
  Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
  there is no package called ‘Heatplus’
  Error in plot.mpcross(dat.rf) : could not find function "heatmap_2"
  Calls: plot -> plot -> plot.mpcross
  Execution halted
• elapsed time (check, wall clock): 1:11