- using R version 2.14.0 (2011-10-31)
- using platform: i386-apple-darwin9.8.0 (32-bit)
- using session charset: ASCII
- checking for file 'mlmRev/DESCRIPTION' ... OK
- this is package 'mlmRev' version '1.0-1'
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking whether package 'mlmRev' can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking sizes of PDF files under 'inst/doc' ... OK
- checking examples ... OK
- checking for unstated dependencies in tests ... OK
- checking tests ... OK
Running 'guImmun.R'
Comparing 'guImmun.Rout' to 'guImmun.Rout.save' ...5,17d4
< Attaching package: 'Matrix'
<
< The following object(s) are masked from 'package:base':
<
< det
<
<
< Attaching package: 'lme4'
<
< The following object(s) are masked from 'package:stats':
<
< AIC, BIC
<
39c26
< mom25pY -0.1284 0.1543 -0.83 0.4054
---
> mom25pY -0.1284 0.1543 -0.83 0.4055
42,44c29,31
< ord7p 0.2892 0.2483 1.16 0.2441
< ethnN -0.1132 0.3125 -0.36 0.7172
< ethnS -0.0348 0.2322 -0.15 0.8810
---
> ord7p 0.2893 0.2483 1.16 0.2440
> ethnN -0.1131 0.3125 -0.36 0.7173
> ethnS -0.0347 0.2322 -0.15 0.8810
87c74
< comm (Intercept) 0.5227 0.723
---
> comm (Intercept) 0.5228 0.723
92c79
< (Intercept) -0.6589 0.2927 -2.25 0.02437 *
---
> (Intercept) -0.6589 0.2927 -2.25 0.02438 *
94,97c81,84
< mom25pY -0.1360 0.1537 -0.88 0.37643
< ord23 -0.1375 0.1605 -0.86 0.39167
< ord46 0.1556 0.1977 0.79 0.43130
< ord7p 0.2404 0.2464 0.98 0.32909
---
> mom25pY -0.1359 0.1537 -0.88 0.37652
> ord23 -0.1375 0.1605 -0.86 0.39166
> ord46 0.1556 0.1977 0.79 0.43148
> ord7p 0.2404 0.2464 0.98 0.32913
99c86
< ethnS -0.0784 0.2311 -0.34 0.73439
---
> ethnS -0.0784 0.2311 -0.34 0.73438
101,102c88,89
< momEdS 0.3877 0.2766 1.40 0.16103
< momWorkY 0.2721 0.1283 2.12 0.03388 *
---
> momEdS 0.3876 0.2766 1.40 0.16115
> momWorkY 0.2721 0.1283 2.12 0.03390 *
126c113
< mom25pY 0.0258 0.1163 0.22 0.82408
---
> mom25pY 0.0258 0.1163 0.22 0.82405
128,131c115,118
< ethnS -0.0812 0.2294 -0.35 0.72330
< momEdP 0.3339 0.1366 2.44 0.01452 *
< momEdS 0.3266 0.2708 1.21 0.22775
< momWorkY 0.2538 0.1272 2.00 0.04591 *
---
> ethnS -0.0812 0.2294 -0.35 0.72324
> momEdP 0.3339 0.1366 2.44 0.01453 *
> momEdS 0.3266 0.2708 1.21 0.22778
> momWorkY 0.2538 0.1272 2.00 0.04592 *
133c120
< pcInd81 -0.8367 0.3220 -2.60 0.00937 **
---
> pcInd81 -0.8366 0.3220 -2.60 0.00938 **
169c156
< mom25pY 0.0259 0.1162 0.22 0.82334
---
> mom25pY 0.0259 0.1162 0.22 0.82333
Running 'lmerTest.R'
Comparing 'lmerTest.Rout' to 'lmerTest.Rout.save' ...6,18d5
< Attaching package: 'Matrix'
<
< The following object(s) are masked from 'package:base':
<
< det
<
<
< Attaching package: 'lme4'
<
< The following object(s) are masked from 'package:stats':
<
< AIC, BIC
<
59c46
< (Intercept) 40.7496 0.2881 141.4
---
> (Intercept) 40.7496 0.2881 141.5
61c48
< avg.IQ.ver.cen 1.4089 0.3238 4.4
---
> avg.IQ.ver.cen 1.4089 0.3237 4.4
178c165
< fm3 7 16519 16567 -8253 0.0 0 1
---
> fm3 7 16519 16567 -8253 0.0 0 <2e-16
219,220c206,207
< school (Intercept) 0.08583 0.293
< Residual 0.56253 0.750
---
> school (Intercept) 0.08583 0.2930
> Residual 0.56253 0.7500
248c235
< lea (Intercept) 0.01477 0.1215
---
> lea (Intercept) 0.01478 0.1216
304c291
< Subject (Intercept) 64.0336 8.0021
---
> Subject (Intercept) 64.0345 8.0022
333c320
< Subject (Intercept) 64.0348 8.0022
---
> Subject (Intercept) 64.0346 8.0022
361c348
< fm08 12 649.4 690.8 -312.7 0 0 <2e-16
---
> fm08 12 649.4 690.8 -312.7 1.68e-06 0 <2e-16
363c350
< + logLik(fm08, REML=FALSE), tol=1e-07))
---
> + logLik(fm08, REML=FALSE)))
371,379c358,366
< 1: 14869.350: 0.271130 0.0962178
< 2: 14869.120: 0.234541 0.0337752
< 3: 14868.448: 0.257104 0.0405373
< 4: 14868.361: 0.249361 0.0627829
< 5: 14868.329: 0.253833 0.0616933
< 6: 14868.328: 0.255792 0.0575286
< 7: 14868.326: 0.254891 0.0578339
< 8: 14868.325: 0.254282 0.0585646
< 9: 14868.325: 0.254614 0.0587515
---
> 1: 14869.350: 0.271130 0.0962183
> 2: 14869.120: 0.234540 0.0337758
> 3: 14868.448: 0.257104 0.0405381
> 4: 14868.361: 0.249359 0.0627845
> 5: 14868.329: 0.253832 0.0616944
> 6: 14868.328: 0.255792 0.0575285
> 7: 14868.326: 0.254891 0.0578338
> 8: 14868.325: 0.254282 0.0585648
> 9: 14868.325: 0.254614 0.0587516
381c368
< 11: 14868.325: 0.254509 0.0589166
---
> 11: 14868.325: 0.254509 0.0589167
444c431
< second (Intercept) 0.04637 0.2153
---
> second (Intercept) 0.04639 0.2154
446c433
< Residual 4.21852 2.0539
---
> Residual 4.21851 2.0539
451c438
< (Intercept) 5.92742 0.08660 68.4
---
> (Intercept) 5.92741 0.08660 68.4
Running 'versions.R'
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in 'inst/doc' ... OK
- checking running R code from vignettes ... OK
- checking re-building of vignette PDFs ... OK
- checking PDF version of manual ... OK
- elapsed time (check, wall clock): 5:57