• using R version 2.14.0 (2011-10-31)
  • using platform: i386-apple-darwin9.8.0 (32-bit)
  • using session charset: ASCII
  • checking for file 'lme4/DESCRIPTION' ... OK
  • this is package 'lme4' version '0.999375-42'
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking whether package 'lme4' can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • loading checks for arch 'i386'
    ** checking whether the package can be loaded ... OK
    ** checking whether the package can be loaded with stated dependencies ... OK
    ** checking whether the package can be unloaded cleanly ... OK
    ** checking whether the namespace can be loaded with stated dependencies ... OK
    ** checking whether the namespace can be unloaded cleanly ... OK
  • loading checks for arch 'x86_64'
    ** checking whether the package can be loaded ... OK
    ** checking whether the package can be loaded with stated dependencies ... OK
    ** checking whether the package can be unloaded cleanly ... OK
    ** checking whether the namespace can be loaded with stated dependencies ... OK
    ** checking whether the namespace can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... OK
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of 'data' directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking for portable compilation flags in Makevars ... OK
  • checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
  • checking compiled code ... OK
  • checking sizes of PDF files under 'inst/doc' ... OK
  • checking examples ...
    ** running examples for arch 'i386' ... OK
    ** running examples for arch 'x86_64' ... OK
  • checking for unstated dependencies in tests ... OK
  • checking tests ...
    ** running tests for arch 'i386' OK
    Running 'Gamma.R'
    Running 'drop.R'
    Running 'extras.R'
    Running 'lmer-1.R'
    Comparing 'lmer-1.Rout' to 'lmer-1.Rout.save' ... OK
    Running 'lmer-conv.R'
    Running 'lmer.R'
    Running 'nlmer-conv.R'
    Running 'nlmer.R'
    Comparing 'nlmer.Rout' to 'nlmer.Rout.save' ...6d5
    < > ## TODO: nicer version of this is in system.file("test-tools.R", package = "Matrix")
    30c29
    < lKa 0.227360 0.47682 NaN
    ---
    > lKa 0.227357 0.47682 NaN
    32c31
    < Residual 0.591715 0.76923
    ---
    > Residual 0.591716 0.76923
    39c38
    < lCl -3.23552 0.05235 -61.80
    ---
    > lCl -3.23551 0.05235 -61.80
    58c57
    < Subject lKa 0.227492 0.47696
    ---
    > Subject lKa 0.227493 0.47696
    60c59
    < Residual 0.591691 0.76921
    ---
    > Residual 0.591689 0.76921
    Running 'simulate.R'
    ** running tests for arch 'x86_64' OK
    Running 'Gamma.R'
    Running 'drop.R'
    Running 'extras.R'
    Running 'lmer-1.R'
    Comparing 'lmer-1.Rout' to 'lmer-1.Rout.save' ... OK
    Running 'lmer-conv.R'
    Running 'lmer.R'
    Running 'nlmer-conv.R'
    Running 'nlmer.R'
    Comparing 'nlmer.Rout' to 'nlmer.Rout.save' ...6d5
    < > ## TODO: nicer version of this is in system.file("test-tools.R", package = "Matrix")
    30c29
    < lKa 0.227360 0.47682 NaN
    ---
    > lKa 0.227357 0.47682 NaN
    32c31
    < Residual 0.591715 0.76923
    ---
    > Residual 0.591716 0.76923
    39c38
    < lCl -3.23552 0.05235 -61.80
    ---
    > lCl -3.23551 0.05235 -61.80
    58c57
    < Subject lKa 0.227492 0.47696
    ---
    > Subject lKa 0.227493 0.47696
    60c59
    < Residual 0.591691 0.76921
    ---
    > Residual 0.591689 0.76921
    Running 'simulate.R'
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in 'inst/doc' ... OK
  • checking running R code from vignettes ... OK
  • checking re-building of vignette PDFs ... OK
  • checking PDF version of manual ... OK
  • elapsed time (check, wall clock): 5:50