• using R version 2.14.0 (2011-10-31)
• using platform: i386-apple-darwin9.8.0 (32-bit)
• using session charset: ASCII
• checking for file 'lme4/DESCRIPTION' ... OK
• this is package 'lme4' version '0.999375-42'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package 'lme4' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch 'i386'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• loading checks for arch 'x86_64'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under 'inst/doc' ... OK
• checking examples ...
  ** running examples for arch 'i386' ... OK
  ** running examples for arch 'x86_64' ... OK
• checking for unstated dependencies in tests ... OK
• checking tests ...
  ** running tests for arch 'i386' OK
  Running 'Gamma.R'
  Running 'drop.R'
  Running 'extras.R'
  Running 'lmer-1.R'
  Comparing 'lmer-1.Rout' to 'lmer-1.Rout.save' ... OK
  Running 'lmer-conv.R'
  Running 'lmer.R'
  Running 'nlmer-conv.R'
  Running 'nlmer.R'
  Comparing 'nlmer.Rout' to 'nlmer.Rout.save' ...6d5
  < > ## TODO: nicer version of this is in system.file("test-tools.R", package = "Matrix")
  30c29
  < lKa 0.227360 0.47682 NaN
  ---
  > lKa 0.227357 0.47682 NaN
  32c31
  < Residual 0.591715 0.76923
  ---
  > Residual 0.591716 0.76923
  39c38
  < lCl -3.23552 0.05235 -61.80
  ---
  > lCl -3.23551 0.05235 -61.80
  58c57
  < Subject lKa 0.227492 0.47696
  ---
  > Subject lKa 0.227493 0.47696
  60c59
  < Residual 0.591691 0.76921
  ---
  > Residual 0.591689 0.76921
  Running 'simulate.R'
  ** running tests for arch 'x86_64' OK
  Running 'Gamma.R'
  Running 'drop.R'
  Running 'extras.R'
  Running 'lmer-1.R'
  Comparing 'lmer-1.Rout' to 'lmer-1.Rout.save' ... OK
  Running 'lmer-conv.R'
  Running 'lmer.R'
  Running 'nlmer-conv.R'
  Running 'nlmer.R'
  Comparing 'nlmer.Rout' to 'nlmer.Rout.save' ...6d5
  < > ## TODO: nicer version of this is in system.file("test-tools.R", package = "Matrix")
  30c29
  < lKa 0.227360 0.47682 NaN
  ---
  > lKa 0.227357 0.47682 NaN
  32c31
  < Residual 0.591715 0.76923
  ---
  > Residual 0.591716 0.76923
  39c38
  < lCl -3.23552 0.05235 -61.80
  ---
  > lCl -3.23551 0.05235 -61.80
  58c57
  < Subject lKa 0.227492 0.47696
  ---
  > Subject lKa 0.227493 0.47696
  60c59
  < Residual 0.591691 0.76921
  ---
  > Residual 0.591689 0.76921
  Running 'simulate.R'
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... OK
• checking PDF version of manual ... OK
• elapsed time (check, wall clock): 5:50