• using R Under development (unstable) (2011-09-26 r57087)
• using platform: i386-apple-darwin9.8.0 (32-bit)
• using session charset: ASCII
• checking for file 'hyperSpec/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'hyperSpec' version '0.95'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package 'hyperSpec' can be installed ... WARNING
  Found the following significant warnings:
  Warning: value of 'strip.white' option should be lowercase
  Warning: value of 'strip.white' option should be lowercase
  Warning: value of 'strip.white' option should be lowercase
  Warning: value of 'strip.white' option should be lowercase
  See http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/hyperSpec-00install.html for details.
• checking installed package size ... NOTE
  installed size is 8.5Mb
  sub-directories of 1Mb or more:
  data 1.9Mb
  doc 6.0Mb
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File 'hyperSpec/R/hyperSpec.R':
  .onLoad calls:
  require(lattice)
  require(utils)
  .onAttach calls:
  cat("Package ", desc$Package, ", version ", desc$Version, "\n\n", "To get started, try\n", " vignette (\"introduction\", package = \"hyperSpec\")\n", " package?hyperSpec \n", " vignette (package = \"hyperSpec\")\n\n", "If you use this package please cite it appropriately.\n", " citation(\"hyperSpec\")\nwill give you the correct reference.", "\n\n", "The project is hosted on http://r-forge.r-project.org/projects/hyperspec/\n\n", sep = "")
  
  Package startup functions should not change the search path.
  Package startup functions should use 'packageStartupMessage' to
  generate messages.
  See section 'Good practice' in ?.onAttach.
  
  Warning: local assignments to syntactic functions: ~
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... NOTE
  Package(s) unavailable to check Rd xrefs: 'reshape'
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under 'inst/doc' ... NOTE
  'qpdf' made some significant size reductions:
  compacted 'baselinebelow.pdf' from 532Kb to 165Kb
  compacted 'chondro.pdf' from 1593Kb to 756Kb
  compacted 'chondrocytes.pdf' from 1594Kb to 753Kb
  compacted 'introduction.pdf' from 752Kb to 325Kb
  compacted 'laser.pdf' from 242Kb to 110Kb
  consider running tools::compactPDF() on these files
• checking examples ... OK
• checking for unstated dependencies in vignettes ... NOTE
  'library' or 'require' call not declared from: 'colorspace'
• checking package vignettes in 'inst/doc' ... OK
• checking running R code from vignettes ... WARNING
  Errors in running code in vignettes:
  when running code in 'baselinebelow.Rnw'
  ...
  will give you the correct reference.
  
  The project is hosted on http://r-forge.r-project.org/projects/hyperspec/
  
  
  > library(colorspace)
  
  When sourcing 'baselinebelow.R':
  Error: there is no package called 'colorspace'
  Execution halted
  
• checking re-building of vignette PDFs ... NOTE
  Error in re-building vignettes:
  ...
  Warning: value of 'strip.white' option should be lowercase
  Loading required package: lattice
  
  Error: processing vignette 'baselinebelow.Rnw' failed with diagnostics:
  chunk 2 (label = init)
  Error in library(colorspace) : there is no package called 'colorspace'
  Execution halted
  
• checking PDF version of manual ... OK
  WARNING: There were 2 warnings, see
  '/Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.14/hyperSpec.Rcheck/00check.log'
  for details
• elapsed time (check, wall clock): 2:07