Check results for 'haplo.stats'

using R version 2.14.0 (2011-10-31)
using platform: i386-apple-darwin9.8.0 (32-bit)
using session charset: ASCII
checking for file 'haplo.stats/DESCRIPTION' ... OK
this is package 'haplo.stats' version '1.5.2'
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking whether package 'haplo.stats' can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
loading checks for arch 'x86_64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... NOTE
glm.fit.nowarn: no visible binding for global variable 'n'
haplo.glm: no visible binding for global variable 'eta'
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of 'data' directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking compiled code ... NOTE
File '/Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.14/haplo.stats.Rcheck/haplo.stats/libs/i386/haplo.stats.so':
Found '_printf', possibly from 'printf' (C)
Found '_putchar', possibly from 'putchar' (C)
Found '_puts', possibly from 'printf' (C), 'puts' (C)

Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console. The detected symbols
are linked into the code but might come from libraries and not actually
be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
checking sizes of PDF files under 'inst/doc' ... OK
checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x86_64' ... OK
checking for unstated dependencies in tests ... OK
checking tests ...
** running tests for arch 'i386' OK
Running 'test.Ginv.R'
Comparing 'test.Ginv.Rout' to 'test.Ginv.Rout.save' ... OK
Running 'test.haplo.em.R'
Comparing 'test.haplo.em.Rout' to 'test.haplo.em.Rout.save' ...14c14
< [1] "C"
---
> [1] "LC_CTYPE=C;LC_NUMERIC=C;LC_TIME=C;LC_COLLATE=C;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=C;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C"
17c17
< Platform: i386-apple-darwin9.8.0/i386 (32-bit)
---
> Platform: x86_64-unknown-linux-gnu (64-bit)
20c20,25
< [1] C
---
> [1] LC_CTYPE=C LC_NUMERIC=C
> [3] LC_TIME=C LC_COLLATE=C
> [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
> [7] LC_PAPER=C LC_NAME=C
> [9] LC_ADDRESS=C LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
124c129
< 8 3 f G h2 F g h2 1.00000
---
> 6 3 F g h2 f G h2 1.00000
126,130c131,135
< 9 4 f g h1 f G h2 1.00000
< 6 5 F g h2 F G H 1.00000
< 8.1 6 f G h2 f G h1 1.00000
< 8.2 7 f G h2 F g h2 1.00000
< 1.1 8 F G H F g h1 0.25095
---
> 8 4 f G h2 f g h1 1.00000
> 1.1 5 F G H F g h2 1.00000
> 7.1 6 f G h1 f G h2 1.00000
> 6.1 7 F g h2 f G h2 1.00000
> 1.2 8 F G H F g h1 0.25095
132c137
< 5.1 8 F g h1 F G h1 0.40212
---
> 2.3 8 F G h1 F g h1 0.40212
134,141c139,146
< 6.1 8 F g h2 F G h1 0.34694
< 7.1 9 f G h1 F G h1 0.18357
< 9.1 9 f g h1 F G h1 0.28450
< 5.2 9 F g h1 f G h1 0.20861
< 9.2 9 f g h1 F g h1 0.32331
< 2.3 10 F G h1 f g h2 0.00000
< 8.3 10 f G h2 F g h1 0.76212
< 9.3 10 f g h1 F G h2 0.00000
---
> 2.4 8 F G h1 F g h2 0.34694
> 2.5 9 F G h1 f G h1 0.18357
> 2.6 9 F G h1 f g h1 0.28450
> 5.1 9 F g h1 f G h1 0.20861
> 5.2 9 F g h1 f g h1 0.32331
> 2.7 10 F G h1 f g h2 0.00000
> 5.3 10 F g h1 f G h2 0.76212
> 3.1 10 F G h2 f g h1 0.00000
143,155c148,160
< 8.4 11 f G h2 F G h1 1.00000
< 3.1 11 F G h2 f G h1 0.00000
< 1.2 12 F G H F g h1 0.25095
< 2.4 12 F G h1 F g H 0.00000
< 5.3 12 F g h1 F G h1 0.40212
< 5.4 12 F g h1 F G h2 0.00000
< 6.3 12 F g h2 F G h1 0.34694
< 7.2 13 f G h1 F G h1 0.18357
< 9.4 13 f g h1 F G h1 0.28450
< 5.5 13 F g h1 f G h1 0.20861
< 5.6 13 F g h1 f g h1 0.32331
< 7.3 14 f G h1 f g h2 0.00000
< 9.5 14 f g h1 f G h2 1.00000
---
> 2.8 11 F G h1 f G h2 1.00000
> 3.2 11 F G h2 f G h1 0.00000
> 1.3 12 F G H F g h1 0.25095
> 2.9 12 F G h1 F g H 0.00000
> 2.10 12 F G h1 F g h1 0.40212
> 3.3 12 F G h2 F g h1 0.00000
> 2.11 12 F G h1 F g h2 0.34694
> 2.12 13 F G h1 f G h1 0.18357
> 2.13 13 F G h1 f g h1 0.28450
> 5.4 13 F g h1 f G h1 0.20861
> 5.5 13 F g h1 f g h1 0.32331
> 7.2 14 f G h1 f g h2 0.00000
> 8.1 14 f G h2 f g h1 1.00000
174c179
< 5 3 8 6 1.00000
---
> 5 3 6 8 1.00000
176,179c181,184
< 7 4 9 8 1.00000
< 8 5 6 1 1.00000
< 9 6 8 7 1.00000
< 10 7 8 6 1.00000
---
> 7 4 8 9 1.00000
> 8 5 1 6 1.00000
> 9 6 7 8 1.00000
> 10 7 6 8 1.00000
182c187
< 13 8 5 2 0.40212
---
> 13 8 2 5 0.40212
184,186c189,191
< 15 8 6 2 0.34694
< 16 9 7 2 0.18357
< 17 9 9 2 0.28450
---
> 15 8 2 6 0.34694
> 16 9 2 7 0.18357
> 17 9 2 9 0.28450
188c193
< 19 9 9 5 0.32331
---
> 19 9 5 9 0.32331
190,191c195,196
< 21 10 8 5 0.76212
< 22 10 9 3 0.00000
---
> 21 10 5 8 0.76212
> 22 10 3 9 0.00000
193c198
< 24 11 8 2 1.00000
---
> 24 11 2 8 1.00000
197,201c202,206
< 28 12 5 2 0.40212
< 29 12 5 3 0.00000
< 30 12 6 2 0.34694
< 31 13 7 2 0.18357
< 32 13 9 2 0.28450
---
> 28 12 2 5 0.40212
> 29 12 3 5 0.00000
> 30 12 2 6 0.34694
> 31 13 2 7 0.18357
> 32 13 2 9 0.28450
205c210
< 36 14 9 8 1.00000
---
> 36 14 8 9 1.00000
491c496
< 2 2 12212211 11122122 1.000000e+00 12212211 11122122
---
> 2 2 11122122 12212211 1.000000e+00 12212211 11122122
495,497c500,502
< 6 5 12221112 11112211 9.427027e-02 12212211 11121112
< 7 6 21221112 11121112 1.000000e+00 21221112 11121112
< 8 7 21221112 12212211 1.000000e+00 12212211 21221112
---
> 6 5 11112211 12221112 9.427027e-02 12212211 11121112
> 7 6 11121112 21221112 1.000000e+00 21221112 11121112
> 8 7 12212211 21221112 1.000000e+00 12212211 21221112
499c504
< 10 9 11122122 11121112 1.000000e+00 11121112 11122122
---
> 10 9 11121112 11122122 1.000000e+00 11121112 11122122
501c506
< 12 11 11122122 11121112 1.000000e+00 11121112 11122122
---
> 12 11 11121112 11122122 1.000000e+00 11121112 11122122
504c509
< 15 13 12221112 11112211 9.427027e-02 11121112 12212211
---
> 15 13 11112211 12221112 9.427027e-02 11121112 12212211
507c512
< 18 16 21112212 12221112 9.999999e-01 12221112 21112212
---
> 18 16 12221112 21112212 9.999999e-01 12221112 21112212
509c514
< 20 17 12212211 11122122 1.000000e+00 12212211 11122122
---
> 20 17 11122122 12212211 1.000000e+00 12212211 11122122
511c516
< 22 19 12221112 11121112 1.000000e+00 12221112 11121112
---
> 22 19 11121112 12221112 1.000000e+00 12221112 11121112
524c529
< 35 31 11122122 11121112 1.000000e+00 11122122 11121112
---
> 35 31 11121112 11122122 1.000000e+00 11122122 11121112
526c531
< 37 33 21221112 11122122 1.000000e+00 11122122 21221112
---
> 37 33 11122122 21221112 1.000000e+00 11122122 21221112
528c533
< 39 35 21221112 21112212 1.000000e+00 21221112 21112212
---
> 39 35 21112212 21221112 1.000000e+00 21221112 21112212
535c540
< 46 41 12212211 11121112 9.057297e-01 12212211 11121112
---
> 46 41 11121112 12212211 9.057297e-01 12212211 11121112
538,539c543,544
< 49 43 11122122 11121112 1.000000e+00 11121112 11122122
< 50 44 21112212 12212211 1.000000e+00 21112212 12212211
---
> 49 43 11121112 11122122 1.000000e+00 11121112 11122122
> 50 44 12212211 21112212 1.000000e+00 21112212 12212211
Running 'test.haplo.power.R'
Comparing 'test.haplo.power.Rout' to 'test.haplo.power.Rout.save' ...21c21
< [1] "C"
---
> [1] "LC_CTYPE=C;LC_NUMERIC=C;LC_TIME=C;LC_COLLATE=C;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=C;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C"
24c24
< Platform: i386-apple-darwin9.8.0/i386 (32-bit)
---
> Platform: x86_64-unknown-linux-gnu (64-bit)
27c27,32
< [1] C
---
> [1] LC_CTYPE=C LC_NUMERIC=C
> [3] LC_TIME=C LC_COLLATE=C
> [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
> [7] LC_PAPER=C LC_NAME=C
> [9] LC_ADDRESS=C LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
Running 'test.methods.haplo.glm.R'
Comparing 'test.methods.haplo.glm.Rout' to 'test.methods.haplo.glm.Rout.save' ...12c12
< [1] "C"
---
> [1] "LC_CTYPE=C;LC_NUMERIC=C;LC_TIME=C;LC_COLLATE=C;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=C;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C"
15c15
< Platform: i386-apple-darwin9.8.0/i386 (32-bit)
---
> Platform: x86_64-unknown-linux-gnu (64-bit)
18c18,23
< [1] C
---
> [1] LC_CTYPE=C LC_NUMERIC=C
> [3] LC_TIME=C LC_COLLATE=C
> [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
> [7] LC_PAPER=C LC_NAME=C
> [9] LC_ADDRESS=C LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
191c196
< hap.77 -4.058363e-08 3.310615e-08 1.093231e-08 -1.238478e-09
---
> hap.77 -4.058363e-08 3.310615e-08 1.093231e-08 -1.238479e-09
212c217
< hap.77 -2.569089e-09 8.519476e-10 1.374934e-08 8.440416e-09
---
> hap.77 -2.569089e-09 8.519475e-10 1.374934e-08 8.440416e-09
216,217d220
< hap.rare -2.569089e-09 8.519474e-10 1.374934e-08 8.440416e-09
< hap.rare -2.569089e-09 8.519473e-10 1.374934e-08 8.440416e-09
219,220c222,225
< hap.rare -2.569089e-09 8.519477e-10 1.374934e-08 8.440416e-09
< hap.rare -5.138179e-09 1.703895e-09 2.749868e-08 1.688083e-08
---
> hap.rare -2.569089e-09 8.519473e-10 1.374934e-08 8.440416e-09
> hap.rare -2.569089e-09 8.519475e-10 1.374934e-08 8.440416e-09
> hap.rare -2.569089e-09 8.519474e-10 1.374934e-08 8.440416e-09
> hap.rare -5.138178e-09 1.703895e-09 2.749868e-08 1.688083e-08
227c232
< geno.78 8.481883e-02 -3.191332e-06 8.519474e-10 8.519474e-10
---
> geno.78 8.481883e-02 -3.191332e-06 8.519477e-10 8.519475e-10
247,248c252,253
< geno.77 3.153900e-07 -4.343015e-06 -1.246208e-05 -2.569089e-09
< geno.78 2.239790e-07 -2.129393e-06 -8.450638e-06 8.519475e-10
---
> geno.77 3.153900e-07 -4.343015e-06 -1.246208e-05 -2.569090e-09
> geno.78 2.239790e-07 -2.129393e-06 -8.450638e-06 8.519474e-10
268,269c273,274
< geno.77 -2.569089e-09 -2.569089e-09 -2.569089e-09 -5.138178e-09
< geno.78 8.519476e-10 8.519472e-10 8.519473e-10 1.703895e-09
---
> geno.77 -2.569089e-09 -2.569089e-09 -2.569089e-09 -5.138179e-09
> geno.78 8.519475e-10 8.519473e-10 8.519475e-10 1.703894e-09
** running tests for arch 'x86_64' OK
Running 'test.Ginv.R'
Comparing 'test.Ginv.Rout' to 'test.Ginv.Rout.save' ... OK
Running 'test.haplo.em.R'
Comparing 'test.haplo.em.Rout' to 'test.haplo.em.Rout.save' ...14c14
< [1] "C"
---
> [1] "LC_CTYPE=C;LC_NUMERIC=C;LC_TIME=C;LC_COLLATE=C;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=C;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C"
17c17
< Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
---
> Platform: x86_64-unknown-linux-gnu (64-bit)
20c20,25
< [1] C
---
> [1] LC_CTYPE=C LC_NUMERIC=C
> [3] LC_TIME=C LC_COLLATE=C
> [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
> [7] LC_PAPER=C LC_NAME=C
> [9] LC_ADDRESS=C LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
124c129
< 8 3 f G h2 F g h2 1.00000
---
> 6 3 F g h2 f G h2 1.00000
126,130c131,135
< 9 4 f g h1 f G h2 1.00000
< 6 5 F g h2 F G H 1.00000
< 8.1 6 f G h2 f G h1 1.00000
< 8.2 7 f G h2 F g h2 1.00000
< 1.1 8 F G H F g h1 0.25095
---
> 8 4 f G h2 f g h1 1.00000
> 1.1 5 F G H F g h2 1.00000
> 7.1 6 f G h1 f G h2 1.00000
> 6.1 7 F g h2 f G h2 1.00000
> 1.2 8 F G H F g h1 0.25095
132c137
< 5.1 8 F g h1 F G h1 0.40212
---
> 2.3 8 F G h1 F g h1 0.40212
134,141c139,146
< 6.1 8 F g h2 F G h1 0.34694
< 7.1 9 f G h1 F G h1 0.18357
< 9.1 9 f g h1 F G h1 0.28450
< 5.2 9 F g h1 f G h1 0.20861
< 9.2 9 f g h1 F g h1 0.32331
< 2.3 10 F G h1 f g h2 0.00000
< 8.3 10 f G h2 F g h1 0.76212
< 9.3 10 f g h1 F G h2 0.00000
---
> 2.4 8 F G h1 F g h2 0.34694
> 2.5 9 F G h1 f G h1 0.18357
> 2.6 9 F G h1 f g h1 0.28450
> 5.1 9 F g h1 f G h1 0.20861
> 5.2 9 F g h1 f g h1 0.32331
> 2.7 10 F G h1 f g h2 0.00000
> 5.3 10 F g h1 f G h2 0.76212
> 3.1 10 F G h2 f g h1 0.00000
143,155c148,160
< 8.4 11 f G h2 F G h1 1.00000
< 3.1 11 F G h2 f G h1 0.00000
< 1.2 12 F G H F g h1 0.25095
< 2.4 12 F G h1 F g H 0.00000
< 5.3 12 F g h1 F G h1 0.40212
< 5.4 12 F g h1 F G h2 0.00000
< 6.3 12 F g h2 F G h1 0.34694
< 7.2 13 f G h1 F G h1 0.18357
< 9.4 13 f g h1 F G h1 0.28450
< 5.5 13 F g h1 f G h1 0.20861
< 5.6 13 F g h1 f g h1 0.32331
< 7.3 14 f G h1 f g h2 0.00000
< 9.5 14 f g h1 f G h2 1.00000
---
> 2.8 11 F G h1 f G h2 1.00000
> 3.2 11 F G h2 f G h1 0.00000
> 1.3 12 F G H F g h1 0.25095
> 2.9 12 F G h1 F g H 0.00000
> 2.10 12 F G h1 F g h1 0.40212
> 3.3 12 F G h2 F g h1 0.00000
> 2.11 12 F G h1 F g h2 0.34694
> 2.12 13 F G h1 f G h1 0.18357
> 2.13 13 F G h1 f g h1 0.28450
> 5.4 13 F g h1 f G h1 0.20861
> 5.5 13 F g h1 f g h1 0.32331
> 7.2 14 f G h1 f g h2 0.00000
> 8.1 14 f G h2 f g h1 1.00000
174c179
< 5 3 8 6 1.00000
---
> 5 3 6 8 1.00000
176,179c181,184
< 7 4 9 8 1.00000
< 8 5 6 1 1.00000
< 9 6 8 7 1.00000
< 10 7 8 6 1.00000
---
> 7 4 8 9 1.00000
> 8 5 1 6 1.00000
> 9 6 7 8 1.00000
> 10 7 6 8 1.00000
182c187
< 13 8 5 2 0.40212
---
> 13 8 2 5 0.40212
184,186c189,191
< 15 8 6 2 0.34694
< 16 9 7 2 0.18357
< 17 9 9 2 0.28450
---
> 15 8 2 6 0.34694
> 16 9 2 7 0.18357
> 17 9 2 9 0.28450
188c193
< 19 9 9 5 0.32331
---
> 19 9 5 9 0.32331
190,191c195,196
< 21 10 8 5 0.76212
< 22 10 9 3 0.00000
---
> 21 10 5 8 0.76212
> 22 10 3 9 0.00000
193c198
< 24 11 8 2 1.00000
---
> 24 11 2 8 1.00000
197,201c202,206
< 28 12 5 2 0.40212
< 29 12 5 3 0.00000
< 30 12 6 2 0.34694
< 31 13 7 2 0.18357
< 32 13 9 2 0.28450
---
> 28 12 2 5 0.40212
> 29 12 3 5 0.00000
> 30 12 2 6 0.34694
> 31 13 2 7 0.18357
> 32 13 2 9 0.28450
205c210
< 36 14 9 8 1.00000
---
> 36 14 8 9 1.00000
491c496
< 2 2 12212211 11122122 1.000000e+00 12212211 11122122
---
> 2 2 11122122 12212211 1.000000e+00 12212211 11122122
495,497c500,502
< 6 5 12221112 11112211 9.427027e-02 12212211 11121112
< 7 6 21221112 11121112 1.000000e+00 21221112 11121112
< 8 7 21221112 12212211 1.000000e+00 12212211 21221112
---
> 6 5 11112211 12221112 9.427027e-02 12212211 11121112
> 7 6 11121112 21221112 1.000000e+00 21221112 11121112
> 8 7 12212211 21221112 1.000000e+00 12212211 21221112
499c504
< 10 9 11122122 11121112 1.000000e+00 11121112 11122122
---
> 10 9 11121112 11122122 1.000000e+00 11121112 11122122
501c506
< 12 11 11122122 11121112 1.000000e+00 11121112 11122122
---
> 12 11 11121112 11122122 1.000000e+00 11121112 11122122
504c509
< 15 13 12221112 11112211 9.427027e-02 11121112 12212211
---
> 15 13 11112211 12221112 9.427027e-02 11121112 12212211
507c512
< 18 16 21112212 12221112 9.999999e-01 12221112 21112212
---
> 18 16 12221112 21112212 9.999999e-01 12221112 21112212
509c514
< 20 17 12212211 11122122 1.000000e+00 12212211 11122122
---
> 20 17 11122122 12212211 1.000000e+00 12212211 11122122
511c516
< 22 19 12221112 11121112 1.000000e+00 12221112 11121112
---
> 22 19 11121112 12221112 1.000000e+00 12221112 11121112
524c529
< 35 31 11122122 11121112 1.000000e+00 11122122 11121112
---
> 35 31 11121112 11122122 1.000000e+00 11122122 11121112
526c531
< 37 33 21221112 11122122 1.000000e+00 11122122 21221112
---
> 37 33 11122122 21221112 1.000000e+00 11122122 21221112
528c533
< 39 35 21221112 21112212 1.000000e+00 21221112 21112212
---
> 39 35 21112212 21221112 1.000000e+00 21221112 21112212
535c540
< 46 41 12212211 11121112 9.057297e-01 12212211 11121112
---
> 46 41 11121112 12212211 9.057297e-01 12212211 11121112
538,539c543,544
< 49 43 11122122 11121112 1.000000e+00 11121112 11122122
< 50 44 21112212 12212211 1.000000e+00 21112212 12212211
---
> 49 43 11121112 11122122 1.000000e+00 11121112 11122122
> 50 44 12212211 21112212 1.000000e+00 21112212 12212211
Running 'test.haplo.power.R'
Comparing 'test.haplo.power.Rout' to 'test.haplo.power.Rout.save' ...21c21
< [1] "C"
---
> [1] "LC_CTYPE=C;LC_NUMERIC=C;LC_TIME=C;LC_COLLATE=C;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=C;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C"
24c24
< Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
---
> Platform: x86_64-unknown-linux-gnu (64-bit)
27c27,32
< [1] C
---
> [1] LC_CTYPE=C LC_NUMERIC=C
> [3] LC_TIME=C LC_COLLATE=C
> [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
> [7] LC_PAPER=C LC_NAME=C
> [9] LC_ADDRESS=C LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
Running 'test.methods.haplo.glm.R'
Comparing 'test.methods.haplo.glm.Rout' to 'test.methods.haplo.glm.Rout.save' ...12c12
< [1] "C"
---
> [1] "LC_CTYPE=C;LC_NUMERIC=C;LC_TIME=C;LC_COLLATE=C;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=C;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C"
15c15
< Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
---
> Platform: x86_64-unknown-linux-gnu (64-bit)
18c18,23
< [1] C
---
> [1] LC_CTYPE=C LC_NUMERIC=C
> [3] LC_TIME=C LC_COLLATE=C
> [5] LC_MONETARY=C LC_MESSAGES=en_US.UTF-8
> [7] LC_PAPER=C LC_NAME=C
> [9] LC_ADDRESS=C LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
191c196
< hap.77 -4.058363e-08 3.310615e-08 1.093231e-08 -1.238478e-09
---
> hap.77 -4.058363e-08 3.310615e-08 1.093231e-08 -1.238479e-09
212c217
< hap.77 -2.569089e-09 8.519476e-10 1.374934e-08 8.440416e-09
---
> hap.77 -2.569089e-09 8.519475e-10 1.374934e-08 8.440416e-09
216,217d220
< hap.rare -2.569089e-09 8.519474e-10 1.374934e-08 8.440416e-09
< hap.rare -2.569089e-09 8.519473e-10 1.374934e-08 8.440416e-09
219,220c222,225
< hap.rare -2.569089e-09 8.519477e-10 1.374934e-08 8.440416e-09
< hap.rare -5.138179e-09 1.703895e-09 2.749868e-08 1.688083e-08
---
> hap.rare -2.569089e-09 8.519473e-10 1.374934e-08 8.440416e-09
> hap.rare -2.569089e-09 8.519475e-10 1.374934e-08 8.440416e-09
> hap.rare -2.569089e-09 8.519474e-10 1.374934e-08 8.440416e-09
> hap.rare -5.138178e-09 1.703895e-09 2.749868e-08 1.688083e-08
227c232
< geno.78 8.481883e-02 -3.191332e-06 8.519474e-10 8.519474e-10
---
> geno.78 8.481883e-02 -3.191332e-06 8.519477e-10 8.519475e-10
247,248c252,253
< geno.77 3.153900e-07 -4.343015e-06 -1.246208e-05 -2.569089e-09
< geno.78 2.239790e-07 -2.129393e-06 -8.450638e-06 8.519475e-10
---
> geno.77 3.153900e-07 -4.343015e-06 -1.246208e-05 -2.569090e-09
> geno.78 2.239790e-07 -2.129393e-06 -8.450638e-06 8.519474e-10
268,269c273,274
< geno.77 -2.569089e-09 -2.569089e-09 -2.569089e-09 -5.138178e-09
< geno.78 8.519476e-10 8.519472e-10 8.519473e-10 1.703895e-09
---
> geno.77 -2.569089e-09 -2.569089e-09 -2.569089e-09 -5.138179e-09
> geno.78 8.519475e-10 8.519473e-10 8.519475e-10 1.703894e-09
checking PDF version of manual ... OK
elapsed time (check, wall clock): 5:24