• using R version 2.10.0 alpha (2009-10-01 r49916)
• using session charset: ASCII
• checking for file 'gtools/DESCRIPTION' ... OK
• this is package 'gtools' version '2.6.1'
• checking package name space information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'gtools' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the name space can be loaded with stated dependencies ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  running: multiple local function definitions for 'funct' with different
  formal arguments
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... WARNING
  Package(s) unavailable to check Rd xrefs: 'gplots'
  Missing link(s) in documentation object './man/binsearch.Rd':
  '[base]{optim}' '[base]{optimize}' '[base]{uniroot}'
  
  Missing link(s) in documentation object './man/capture.Rd':
  '[base]{capture.output}'
  
  Missing link(s) in documentation object './man/setTCPNoDelay.Rd':
  '[utils]{socketConnection}'
  
  Suspect link(s) in documentation object './man/addLast.Rd':
  '[base]{.Last}'
  
  Suspect link(s) in documentation object './man/checkRVersion.Rd':
  '[base]{R.Version}'
  
  Suspect link(s) in documentation object './man/combinations.Rd':
  '[base]{choose}'
  
  Suspect link(s) in documentation object './man/invalid.Rd':
  '[base]{is.na}' '[base]{is.null}'
  
  Suspect link(s) in documentation object './man/logit.Rd':
  '[moc]{inv.glogit}'
  
  Suspect link(s) in documentation object './man/oddeven.Rd':
  '[base]{round}'
  
  Suspect link(s) in documentation object './man/running.Rd':
  '[base]{sapply}'
  
  See the information in section 'Cross-references' of the 'Writing R
  Extensions' manual.
  
  'Suspect' links are those of the form \link[pkg]{a} where 'a' exists as
  an alias but not as a filename -- such links will not work in R <
  2.10.0, and only in HTML (not PDF) help in current versions.
  
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking data for non-ASCII characters ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $BLAS_LIBS ... OK
• checking examples ... OK
• checking PDF version of manual ... OK
• elapsed time (check, wall clock): 0:22