- using R version 2.10.0 Patched (2009-11-05 r50313)
- using session charset: ASCII
- checking for file 'caret/DESCRIPTION' ... OK
- this is package 'caret' version '4.27'
- checking package name space information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking for executable files ... OK
- checking whether package 'caret' can be installed ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the name space can be loaded with stated dependencies ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
bagEarth.default : foo: no visible global function definition for
'earth'
bagFDA.default : foo: no visible global function definition for 'fda'
bagFDA.default : foo: no visible binding for global variable 'earth'
createGrid : rbfTune: no visible global function definition for
'sigest'
createGrid : marsSeq: no visible global function definition for 'fda'
createGrid : marsSeq: no visible binding for global variable 'earth'
createGrid : marsSeq: no visible global function definition for 'earth'
createGrid : pamTune: no visible global function definition for
'pamr.train'
createModel: no visible global function definition for 'randomForest'
createModel: no visible global function definition for
'randomForestNWS'
createModel: no visible global function definition for 'rfLSF'
createModel: no visible global function definition for 'ksvm'
createModel: no visible global function definition for 'polydot'
createModel: no visible global function definition for 'rbfdot'
createModel: no visible global function definition for 'vanilladot'
createModel: no visible global function definition for 'rvm'
createModel: no visible binding for global variable 'polydot'
createModel: no visible binding for global variable 'rbfdot'
createModel: no visible global function definition for 'lssvm'
createModel: no visible global function definition for 'gausspr'
createModel: no visible global function definition for 'pamr.train'
createModel: no visible global function definition for 'fda'
createModel: no visible binding for global variable 'earth'
createModel: no visible global function definition for 'boost_control'
createModel: no visible global function definition for 'Binomial'
createModel: no visible global function definition for 'GaussReg'
createModel: no visible global function definition for 'mstop'
createModel: no visible global function definition for 'enet'
createModel: no visible global function definition for 'smda'
createModel: no visible global function definition for 'mda'
createModel: no visible binding for global variable 'gen.ridge'
createModel: no visible global function definition for 'relaxo'
createModel: no visible global function definition for 'lars'
createModel: no visible global function definition for 'nodeHarvest'
createModel: no visible global function definition for '.jcache'
getClassLevels: no visible global function definition for 'lev'
plot.rfe: no visible binding for global variable 'Selected'
predictionFunction: no visible global function definition for 'lev'
predictionFunction: no visible global function definition for
'pamr.predict'
predictionFunction: possible error in attributes(modelFit, "model"):
unused argument(s) ("model")
predictors.gbm: no visible binding for global variable 'rel.inf'
predictors.pamrtrained: no visible global function definition for
'pamr.predict'
predictors.sda: no visible binding for global variable 'varIndex'
predictors.smda: no visible binding for global variable 'varIndex'
probFunction: no visible global function definition for 'lev'
probFunction: no visible global function definition for 'pamr.predict'
tuneScheme: no visible binding for global variable '.alpha'
tuneScheme: no visible binding for global variable '.phi'
tuneScheme: no visible binding for global variable '.lambda'
varImp.earth: no visible global function definition for 'evimp'
varImp.pamrtrained: no visible global function definition for
'pamr.predict'
varImp.randomForest: no visible global function definition for
'importance'
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... NOTE
Package(s) unavailable to check Rd xrefs: 'earth', 'mda', 'pamr', 'randomForest'
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking data for non-ASCII characters ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable use of $BLAS_LIBS ... OK
- checking examples ... ERROR
Running examples in 'caret-Ex.R' failed.
The error most likely occurred in:
> ### * bagEarth
>
> flush(stderr()); flush(stdout())
>
> ### Name: bagEarth
> ### Title: Bagged Earth
> ### Aliases: bagEarth print.bagEarth bagEarth.default bagEarth.formula
> ### Keywords: regression
>
> ### ** Examples
>
> library(mda)
Error in library(mda) : there is no package called 'mda'
Execution halted
- elapsed time (check, wall clock): 0:51