• using R version 2.10.0 Patched (2009-11-05 r50313)
• using session charset: ASCII
• checking for file 'caret/DESCRIPTION' ... OK
• this is package 'caret' version '4.27'
• checking package name space information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'caret' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the name space can be loaded with stated dependencies ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  bagEarth.default : foo: no visible global function definition for
  'earth'
  bagFDA.default : foo: no visible global function definition for 'fda'
  bagFDA.default : foo: no visible binding for global variable 'earth'
  createGrid : rbfTune: no visible global function definition for
  'sigest'
  createGrid : marsSeq: no visible global function definition for 'fda'
  createGrid : marsSeq: no visible binding for global variable 'earth'
  createGrid : marsSeq: no visible global function definition for 'earth'
  createGrid : pamTune: no visible global function definition for
  'pamr.train'
  createModel: no visible global function definition for 'randomForest'
  createModel: no visible global function definition for
  'randomForestNWS'
  createModel: no visible global function definition for 'rfLSF'
  createModel: no visible global function definition for 'ksvm'
  createModel: no visible global function definition for 'polydot'
  createModel: no visible global function definition for 'rbfdot'
  createModel: no visible global function definition for 'vanilladot'
  createModel: no visible global function definition for 'rvm'
  createModel: no visible binding for global variable 'polydot'
  createModel: no visible binding for global variable 'rbfdot'
  createModel: no visible global function definition for 'lssvm'
  createModel: no visible global function definition for 'gausspr'
  createModel: no visible global function definition for 'pamr.train'
  createModel: no visible global function definition for 'fda'
  createModel: no visible binding for global variable 'earth'
  createModel: no visible global function definition for 'boost_control'
  createModel: no visible global function definition for 'Binomial'
  createModel: no visible global function definition for 'GaussReg'
  createModel: no visible global function definition for 'mstop'
  createModel: no visible global function definition for 'enet'
  createModel: no visible global function definition for 'smda'
  createModel: no visible global function definition for 'mda'
  createModel: no visible binding for global variable 'gen.ridge'
  createModel: no visible global function definition for 'relaxo'
  createModel: no visible global function definition for 'lars'
  createModel: no visible global function definition for 'nodeHarvest'
  createModel: no visible global function definition for '.jcache'
  getClassLevels: no visible global function definition for 'lev'
  plot.rfe: no visible binding for global variable 'Selected'
  predictionFunction: no visible global function definition for 'lev'
  predictionFunction: no visible global function definition for
  'pamr.predict'
  predictionFunction: possible error in attributes(modelFit, "model"):
  unused argument(s) ("model")
  predictors.gbm: no visible binding for global variable 'rel.inf'
  predictors.pamrtrained: no visible global function definition for
  'pamr.predict'
  predictors.sda: no visible binding for global variable 'varIndex'
  predictors.smda: no visible binding for global variable 'varIndex'
  probFunction: no visible global function definition for 'lev'
  probFunction: no visible global function definition for 'pamr.predict'
  tuneScheme: no visible binding for global variable '.alpha'
  tuneScheme: no visible binding for global variable '.phi'
  tuneScheme: no visible binding for global variable '.lambda'
  varImp.earth: no visible global function definition for 'evimp'
  varImp.pamrtrained: no visible global function definition for
  'pamr.predict'
  varImp.randomForest: no visible global function definition for
  'importance'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... NOTE
  Package(s) unavailable to check Rd xrefs: 'earth', 'mda', 'pamr', 'randomForest'
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking data for non-ASCII characters ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $BLAS_LIBS ... OK
• checking examples ... ERROR
  Running examples in 'caret-Ex.R' failed.
  The error most likely occurred in:
  
  > ### * bagEarth
  >
  > flush(stderr()); flush(stdout())
  >
  > ### Name: bagEarth
  > ### Title: Bagged Earth
  > ### Aliases: bagEarth print.bagEarth bagEarth.default bagEarth.formula
  > ### Keywords: regression
  >
  > ### ** Examples
  >
  > library(mda)
  Error in library(mda) : there is no package called 'mda'
  Execution halted
• elapsed time (check, wall clock): 0:51