* install options are ' --no-html' * installing *source* package 'bayesSurv' ... ** libs ** arch - i386 g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c AK_BLAS_LAPACK.cpp -o AK_BLAS_LAPACK.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c ARS2.cpp -o ARS2.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c GMRF.cpp -o GMRF.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c GMRF_Gspline.cpp -o GMRF_Gspline.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c GMRF_Gspline_Util.cpp -o GMRF_Gspline_Util.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c Gspline.cpp -o Gspline.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c Gspline_update_Intcpt.cpp -o Gspline_update_Intcpt.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c Gspline_update_Scale.cpp -o Gspline_update_Scale.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c Gspline_update_a.cpp -o Gspline_update_a.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c Gspline_update_gamma.cpp -o Gspline_update_gamma.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c Gspline_update_lambda.cpp -o Gspline_update_lambda.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c Gspline_update_sigma.cpp -o Gspline_update_sigma.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c List.cpp -o List.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c MHblocks.cpp -o MHblocks.o MHblocks.cpp: In constructor 'MHblocks::MHblocks()': MHblocks.cpp:21: warning: allocating zero-element array MHblocks.cpp:22: warning: allocating zero-element array MHblocks.cpp:29: warning: allocating zero-element array MHblocks.cpp:30: warning: allocating zero-element array MHblocks.cpp:31: warning: allocating zero-element array MHblocks.cpp:32: warning: allocating zero-element array MHblocks.cpp:33: warning: allocating zero-element array MHblocks.cpp:34: warning: allocating zero-element array MHblocks.cpp:35: warning: allocating zero-element array MHblocks.cpp:38: warning: allocating zero-element array MHblocks.cpp: In copy constructor 'MHblocks::MHblocks(const MHblocks&)': MHblocks.cpp:117: warning: allocating zero-element array MHblocks.cpp: In member function 'MHblocks& MHblocks::operator=(const MHblocks&)': MHblocks.cpp:224: warning: allocating zero-element array MHblocks.cpp: In constructor 'MHblocks::MHblocks(double*, int*, double*, int*, const int*, const double*, const int*, const int*)': MHblocks.cpp:264: warning: allocating zero-element array MHblocks.cpp:269: warning: allocating zero-element array MHblocks.cpp:272: warning: allocating zero-element array MHblocks.cpp:273: warning: allocating zero-element array MHblocks.cpp:274: warning: allocating zero-element array MHblocks.cpp:275: warning: allocating zero-element array MHblocks.cpp:276: warning: allocating zero-element array MHblocks.cpp:277: warning: allocating zero-element array MHblocks.cpp:278: warning: allocating zero-element array MHblocks.cpp:281: warning: allocating zero-element array MHblocks.cpp:429: warning: allocating zero-element array g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c MHproposal.cpp -o MHproposal.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c Mvtdist3.cpp -o Mvtdist3.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c Slice_sampler2.cpp -o Slice_sampler2.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c arms.cpp -o arms.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c arrays2Mat.cpp -o arrays2Mat.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c bayesBisurvreg.cpp -o bayesBisurvreg.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c bayesDensity.cpp -o bayesDensity.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c bayesGspline.cpp -o bayesGspline.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c bayesHistogram.cpp -o bayesHistogram.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c bayessurvreg1.cpp -o bayessurvreg1.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c bayessurvreg2.cpp -o bayessurvreg2.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c bblocks.cpp -o bblocks.o bblocks.cpp: In constructor 'bblocks::bblocks()': bblocks.cpp:21: warning: allocating zero-element array bblocks.cpp:22: warning: allocating zero-element array bblocks.cpp:23: warning: allocating zero-element array bblocks.cpp:24: warning: allocating zero-element array bblocks.cpp: In constructor 'bblocks::bblocks(double*, int*, double*, int*, const double*)': bblocks.cpp:174: warning: allocating zero-element array bblocks.cpp:175: warning: allocating zero-element array bblocks.cpp:176: warning: allocating zero-element array bblocks.cpp:177: warning: allocating zero-element array g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c birthDeath.cpp -o birthDeath.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c checkImputeData.cpp -o checkImputeData.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c cholesky.cpp -o cholesky.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c classBetaGamma.cpp -o classBetaGamma.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c classBetaGammaExtend.cpp -o classBetaGammaExtend.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c classCovMatrix.cpp -o classCovMatrix.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c classCovMatrixExtend.cpp -o classCovMatrixExtend.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c classRandomEff.cpp -o classRandomEff.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c classRandomEff_rhoNorm.cpp -o classRandomEff_rhoNorm.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c covMatrix.cpp -o covMatrix.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c in_output.cpp -o in_output.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c in_output_GS.cpp -o in_output_GS.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c logLikelihood.cpp -o logLikelihood.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c marginal_bayesGspline.cpp -o marginal_bayesGspline.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c miscellaneous.cpp -o miscellaneous.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c miscellaneous_GS.cpp -o miscellaneous_GS.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c mixMoments.cpp -o mixMoments.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c moodyRing.cpp -o moodyRing.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c mvtdist.cpp -o mvtdist.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c newton_raphson.cpp -o newton_raphson.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c openFile.cpp -o openFile.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c predictMisc.cpp -o predictMisc.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c predictive.cpp -o predictive.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c predictive_GS.cpp -o predictive_GS.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c propVector.cpp -o propVector.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c qrdecomp.cpp -o qrdecomp.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c quantile.cpp -o quantile.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c random.cpp -o random.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c randomLogLikelihood.cpp -o randomLogLikelihood.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c regresResidual_GS.cpp -o regresResidual_GS.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c rhoNorm.cpp -o rhoNorm.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c sampledKendallTau.cpp -o sampledKendallTau.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c splitCombine.cpp -o splitCombine.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c structRandomEff32.cpp -o structRandomEff32.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c templatefun.cpp -o templatefun.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c templatefun_GS.cpp -o templatefun_GS.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c updateAlloc.cpp -o updateAlloc.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c updateCovMatRandom.cpp -o updateCovMatRandom.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c updateData.cpp -o updateData.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c updateEta.cpp -o updateEta.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c updateMeans.cpp -o updateMeans.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c updateRandom.cpp -o updateRandom.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c updateRegres.cpp -o updateRegres.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c updateVars.cpp -o updateVars.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c updateWeights.cpp -o updateWeights.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c update_Alloc_GS.cpp -o update_Alloc_GS.o g++-4.2 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c update_Data_GS.cpp -o update_Data_GS.o g++-4.2 -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o bayesSurv.so AK_BLAS_LAPACK.o ARS2.o GMRF.o GMRF_Gspline.o GMRF_Gspline_Util.o Gspline.o Gspline_update_Intcpt.o Gspline_update_Scale.o Gspline_update_a.o Gspline_update_gamma.o Gspline_update_lambda.o Gspline_update_sigma.o List.o MHblocks.o MHproposal.o Mvtdist3.o Slice_sampler2.o arms.o arrays2Mat.o bayesBisurvreg.o bayesDensity.o bayesGspline.o bayesHistogram.o bayessurvreg1.o bayessurvreg2.o bblocks.o birthDeath.o checkImputeData.o cholesky.o classBetaGamma.o classBetaGammaExtend.o classCovMatrix.o classCovMatrixExtend.o classRandomEff.o classRandomEff_rhoNorm.o covMatrix.o in_output.o in_output_GS.o logLikelihood.o marginal_bayesGspline.o miscellaneous.o miscellaneous_GS.o mixMoments.o moodyRing.o mvtdist.o newton_raphson.o openFile.o predictMisc.o predictive.o predictive_GS.o propVector.o qrdecomp.o quantile.o random.o randomLogLikelihood.o regresResidual_GS.o rhoNorm.o sampledKendallTau.o splitCombine.o structRandomEff32.o templatefun.o templatefun_GS.o updateAlloc.o updateCovMatRandom.o updateData.o updateEta.o updateMeans.o updateRandom.o updateRegres.o updateVars.o updateWeights.o update_Alloc_GS.o update_Data_GS.o -L/Library/Frameworks/R.framework/Resources/lib/i386 -lRlapack -L/Library/Frameworks/R.framework/Resources/lib/i386 -lRblas -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ** arch - ppc g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c AK_BLAS_LAPACK.cpp -o AK_BLAS_LAPACK.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c ARS2.cpp -o ARS2.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c GMRF.cpp -o GMRF.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c GMRF_Gspline.cpp -o GMRF_Gspline.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c GMRF_Gspline_Util.cpp -o GMRF_Gspline_Util.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c Gspline.cpp -o Gspline.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c Gspline_update_Intcpt.cpp -o Gspline_update_Intcpt.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c Gspline_update_Scale.cpp -o Gspline_update_Scale.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c Gspline_update_a.cpp -o Gspline_update_a.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c Gspline_update_gamma.cpp -o Gspline_update_gamma.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c Gspline_update_lambda.cpp -o Gspline_update_lambda.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c Gspline_update_sigma.cpp -o Gspline_update_sigma.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c List.cpp -o List.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c MHblocks.cpp -o MHblocks.o MHblocks.cpp: In constructor 'MHblocks::MHblocks()': MHblocks.cpp:21: warning: allocating zero-element array MHblocks.cpp:22: warning: allocating zero-element array MHblocks.cpp:29: warning: allocating zero-element array MHblocks.cpp:30: warning: allocating zero-element array MHblocks.cpp:31: warning: allocating zero-element array MHblocks.cpp:32: warning: allocating zero-element array MHblocks.cpp:33: warning: allocating zero-element array MHblocks.cpp:34: warning: allocating zero-element array MHblocks.cpp:35: warning: allocating zero-element array MHblocks.cpp:38: warning: allocating zero-element array MHblocks.cpp: In copy constructor 'MHblocks::MHblocks(const MHblocks&)': MHblocks.cpp:117: warning: allocating zero-element array MHblocks.cpp: In member function 'MHblocks& MHblocks::operator=(const MHblocks&)': MHblocks.cpp:224: warning: allocating zero-element array MHblocks.cpp: In constructor 'MHblocks::MHblocks(double*, int*, double*, int*, const int*, const double*, const int*, const int*)': MHblocks.cpp:264: warning: allocating zero-element array MHblocks.cpp:269: warning: allocating zero-element array MHblocks.cpp:272: warning: allocating zero-element array MHblocks.cpp:273: warning: allocating zero-element array MHblocks.cpp:274: warning: allocating zero-element array MHblocks.cpp:275: warning: allocating zero-element array MHblocks.cpp:276: warning: allocating zero-element array MHblocks.cpp:277: warning: allocating zero-element array MHblocks.cpp:278: warning: allocating zero-element array MHblocks.cpp:281: warning: allocating zero-element array MHblocks.cpp:429: warning: allocating zero-element array g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c MHproposal.cpp -o MHproposal.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c Mvtdist3.cpp -o Mvtdist3.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c Slice_sampler2.cpp -o Slice_sampler2.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c arms.cpp -o arms.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c arrays2Mat.cpp -o arrays2Mat.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c bayesBisurvreg.cpp -o bayesBisurvreg.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c bayesDensity.cpp -o bayesDensity.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c bayesGspline.cpp -o bayesGspline.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c bayesHistogram.cpp -o bayesHistogram.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c bayessurvreg1.cpp -o bayessurvreg1.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c bayessurvreg2.cpp -o bayessurvreg2.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c bblocks.cpp -o bblocks.o bblocks.cpp: In constructor 'bblocks::bblocks()': bblocks.cpp:21: warning: allocating zero-element array bblocks.cpp:22: warning: allocating zero-element array bblocks.cpp:23: warning: allocating zero-element array bblocks.cpp:24: warning: allocating zero-element array bblocks.cpp: In constructor 'bblocks::bblocks(double*, int*, double*, int*, const double*)': bblocks.cpp:174: warning: allocating zero-element array bblocks.cpp:175: warning: allocating zero-element array bblocks.cpp:176: warning: allocating zero-element array bblocks.cpp:177: warning: allocating zero-element array g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c birthDeath.cpp -o birthDeath.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c checkImputeData.cpp -o checkImputeData.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c cholesky.cpp -o cholesky.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c classBetaGamma.cpp -o classBetaGamma.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c classBetaGammaExtend.cpp -o classBetaGammaExtend.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c classCovMatrix.cpp -o classCovMatrix.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c classCovMatrixExtend.cpp -o classCovMatrixExtend.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c classRandomEff.cpp -o classRandomEff.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c classRandomEff_rhoNorm.cpp -o classRandomEff_rhoNorm.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c covMatrix.cpp -o covMatrix.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c in_output.cpp -o in_output.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c in_output_GS.cpp -o in_output_GS.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c logLikelihood.cpp -o logLikelihood.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c marginal_bayesGspline.cpp -o marginal_bayesGspline.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c miscellaneous.cpp -o miscellaneous.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c miscellaneous_GS.cpp -o miscellaneous_GS.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c mixMoments.cpp -o mixMoments.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c moodyRing.cpp -o moodyRing.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c mvtdist.cpp -o mvtdist.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c newton_raphson.cpp -o newton_raphson.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c openFile.cpp -o openFile.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c predictMisc.cpp -o predictMisc.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c predictive.cpp -o predictive.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c predictive_GS.cpp -o predictive_GS.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c propVector.cpp -o propVector.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c qrdecomp.cpp -o qrdecomp.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c quantile.cpp -o quantile.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c random.cpp -o random.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c randomLogLikelihood.cpp -o randomLogLikelihood.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c regresResidual_GS.cpp -o regresResidual_GS.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c rhoNorm.cpp -o rhoNorm.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c sampledKendallTau.cpp -o sampledKendallTau.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c splitCombine.cpp -o splitCombine.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c structRandomEff32.cpp -o structRandomEff32.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c templatefun.cpp -o templatefun.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c templatefun_GS.cpp -o templatefun_GS.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c updateAlloc.cpp -o updateAlloc.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c updateCovMatRandom.cpp -o updateCovMatRandom.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c updateData.cpp -o updateData.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c updateEta.cpp -o updateEta.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c updateMeans.cpp -o updateMeans.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c updateRandom.cpp -o updateRandom.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c updateRegres.cpp -o updateRegres.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c updateVars.cpp -o updateVars.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c updateWeights.cpp -o updateWeights.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c update_Alloc_GS.cpp -o update_Alloc_GS.o g++-4.2 -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -c update_Data_GS.cpp -o update_Data_GS.o g++-4.2 -arch ppc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o bayesSurv.so AK_BLAS_LAPACK.o ARS2.o GMRF.o GMRF_Gspline.o GMRF_Gspline_Util.o Gspline.o Gspline_update_Intcpt.o Gspline_update_Scale.o Gspline_update_a.o Gspline_update_gamma.o Gspline_update_lambda.o Gspline_update_sigma.o List.o MHblocks.o MHproposal.o Mvtdist3.o Slice_sampler2.o arms.o arrays2Mat.o bayesBisurvreg.o bayesDensity.o bayesGspline.o bayesHistogram.o bayessurvreg1.o bayessurvreg2.o bblocks.o birthDeath.o checkImputeData.o cholesky.o classBetaGamma.o classBetaGammaExtend.o classCovMatrix.o classCovMatrixExtend.o classRandomEff.o classRandomEff_rhoNorm.o covMatrix.o in_output.o in_output_GS.o logLikelihood.o marginal_bayesGspline.o miscellaneous.o miscellaneous_GS.o mixMoments.o moodyRing.o mvtdist.o newton_raphson.o openFile.o predictMisc.o predictive.o predictive_GS.o propVector.o qrdecomp.o quantile.o random.o randomLogLikelihood.o regresResidual_GS.o rhoNorm.o sampledKendallTau.o splitCombine.o structRandomEff32.o templatefun.o templatefun_GS.o updateAlloc.o updateCovMatRandom.o updateData.o updateEta.o updateMeans.o updateRandom.o updateRegres.o updateVars.o updateWeights.o update_Alloc_GS.o update_Data_GS.o -L/Library/Frameworks/R.framework/Resources/lib/ppc -lRlapack -L/Library/Frameworks/R.framework/Resources/lib/ppc -lRblas -lgfortran -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ** arch - x86_64 g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c AK_BLAS_LAPACK.cpp -o AK_BLAS_LAPACK.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c ARS2.cpp -o ARS2.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c GMRF.cpp -o GMRF.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c GMRF_Gspline.cpp -o GMRF_Gspline.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c GMRF_Gspline_Util.cpp -o GMRF_Gspline_Util.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c Gspline.cpp -o Gspline.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c Gspline_update_Intcpt.cpp -o Gspline_update_Intcpt.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c Gspline_update_Scale.cpp -o Gspline_update_Scale.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c Gspline_update_a.cpp -o Gspline_update_a.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c Gspline_update_gamma.cpp -o Gspline_update_gamma.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c Gspline_update_lambda.cpp -o Gspline_update_lambda.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c Gspline_update_sigma.cpp -o Gspline_update_sigma.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c List.cpp -o List.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c MHblocks.cpp -o MHblocks.o MHblocks.cpp: In constructor 'MHblocks::MHblocks()': MHblocks.cpp:21: warning: allocating zero-element array MHblocks.cpp:22: warning: allocating zero-element array MHblocks.cpp:29: warning: allocating zero-element array MHblocks.cpp:30: warning: allocating zero-element array MHblocks.cpp:31: warning: allocating zero-element array MHblocks.cpp:32: warning: allocating zero-element array MHblocks.cpp:33: warning: allocating zero-element array MHblocks.cpp:34: warning: allocating zero-element array MHblocks.cpp:35: warning: allocating zero-element array MHblocks.cpp:38: warning: allocating zero-element array MHblocks.cpp: In copy constructor 'MHblocks::MHblocks(const MHblocks&)': MHblocks.cpp:117: warning: allocating zero-element array MHblocks.cpp: In member function 'MHblocks& MHblocks::operator=(const MHblocks&)': MHblocks.cpp:224: warning: allocating zero-element array MHblocks.cpp: In constructor 'MHblocks::MHblocks(double*, int*, double*, int*, const int*, const double*, const int*, const int*)': MHblocks.cpp:264: warning: allocating zero-element array MHblocks.cpp:269: warning: allocating zero-element array MHblocks.cpp:272: warning: allocating zero-element array MHblocks.cpp:273: warning: allocating zero-element array MHblocks.cpp:274: warning: allocating zero-element array MHblocks.cpp:275: warning: allocating zero-element array MHblocks.cpp:276: warning: allocating zero-element array MHblocks.cpp:277: warning: allocating zero-element array MHblocks.cpp:278: warning: allocating zero-element array MHblocks.cpp:281: warning: allocating zero-element array MHblocks.cpp:429: warning: allocating zero-element array g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c MHproposal.cpp -o MHproposal.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c Mvtdist3.cpp -o Mvtdist3.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c Slice_sampler2.cpp -o Slice_sampler2.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c arms.cpp -o arms.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c arrays2Mat.cpp -o arrays2Mat.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c bayesBisurvreg.cpp -o bayesBisurvreg.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c bayesDensity.cpp -o bayesDensity.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c bayesGspline.cpp -o bayesGspline.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c bayesHistogram.cpp -o bayesHistogram.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c bayessurvreg1.cpp -o bayessurvreg1.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c bayessurvreg2.cpp -o bayessurvreg2.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c bblocks.cpp -o bblocks.o bblocks.cpp: In constructor 'bblocks::bblocks()': bblocks.cpp:21: warning: allocating zero-element array bblocks.cpp:22: warning: allocating zero-element array bblocks.cpp:23: warning: allocating zero-element array bblocks.cpp:24: warning: allocating zero-element array bblocks.cpp: In constructor 'bblocks::bblocks(double*, int*, double*, int*, const double*)': bblocks.cpp:174: warning: allocating zero-element array bblocks.cpp:175: warning: allocating zero-element array bblocks.cpp:176: warning: allocating zero-element array bblocks.cpp:177: warning: allocating zero-element array g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c birthDeath.cpp -o birthDeath.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c checkImputeData.cpp -o checkImputeData.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c cholesky.cpp -o cholesky.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c classBetaGamma.cpp -o classBetaGamma.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c classBetaGammaExtend.cpp -o classBetaGammaExtend.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c classCovMatrix.cpp -o classCovMatrix.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c classCovMatrixExtend.cpp -o classCovMatrixExtend.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c classRandomEff.cpp -o classRandomEff.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c classRandomEff_rhoNorm.cpp -o classRandomEff_rhoNorm.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c covMatrix.cpp -o covMatrix.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c in_output.cpp -o in_output.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c in_output_GS.cpp -o in_output_GS.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c logLikelihood.cpp -o logLikelihood.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c marginal_bayesGspline.cpp -o marginal_bayesGspline.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c miscellaneous.cpp -o miscellaneous.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c miscellaneous_GS.cpp -o miscellaneous_GS.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c mixMoments.cpp -o mixMoments.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c moodyRing.cpp -o moodyRing.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c mvtdist.cpp -o mvtdist.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c newton_raphson.cpp -o newton_raphson.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c openFile.cpp -o openFile.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c predictMisc.cpp -o predictMisc.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c predictive.cpp -o predictive.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c predictive_GS.cpp -o predictive_GS.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c propVector.cpp -o propVector.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c qrdecomp.cpp -o qrdecomp.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c quantile.cpp -o quantile.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c random.cpp -o random.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c randomLogLikelihood.cpp -o randomLogLikelihood.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c regresResidual_GS.cpp -o regresResidual_GS.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c rhoNorm.cpp -o rhoNorm.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c sampledKendallTau.cpp -o sampledKendallTau.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c splitCombine.cpp -o splitCombine.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c structRandomEff32.cpp -o structRandomEff32.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c templatefun.cpp -o templatefun.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c templatefun_GS.cpp -o templatefun_GS.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c updateAlloc.cpp -o updateAlloc.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c updateCovMatRandom.cpp -o updateCovMatRandom.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c updateData.cpp -o updateData.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c updateEta.cpp -o updateEta.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c updateMeans.cpp -o updateMeans.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c updateRandom.cpp -o updateRandom.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c updateRegres.cpp -o updateRegres.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c updateVars.cpp -o updateVars.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c updateWeights.cpp -o updateWeights.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c update_Alloc_GS.cpp -o update_Alloc_GS.o g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -mtune=core2 -g -O2 -c update_Data_GS.cpp -o update_Data_GS.o g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o bayesSurv.so AK_BLAS_LAPACK.o ARS2.o GMRF.o GMRF_Gspline.o GMRF_Gspline_Util.o Gspline.o Gspline_update_Intcpt.o Gspline_update_Scale.o Gspline_update_a.o Gspline_update_gamma.o Gspline_update_lambda.o Gspline_update_sigma.o List.o MHblocks.o MHproposal.o Mvtdist3.o Slice_sampler2.o arms.o arrays2Mat.o bayesBisurvreg.o bayesDensity.o bayesGspline.o bayesHistogram.o bayessurvreg1.o bayessurvreg2.o bblocks.o birthDeath.o checkImputeData.o cholesky.o classBetaGamma.o classBetaGammaExtend.o classCovMatrix.o classCovMatrixExtend.o classRandomEff.o classRandomEff_rhoNorm.o covMatrix.o in_output.o in_output_GS.o logLikelihood.o marginal_bayesGspline.o miscellaneous.o miscellaneous_GS.o mixMoments.o moodyRing.o mvtdist.o newton_raphson.o openFile.o predictMisc.o predictive.o predictive_GS.o propVector.o qrdecomp.o quantile.o random.o randomLogLikelihood.o regresResidual_GS.o rhoNorm.o sampledKendallTau.o splitCombine.o structRandomEff32.o templatefun.o templatefun_GS.o updateAlloc.o updateCovMatRandom.o updateData.o updateEta.o updateMeans.o updateRandom.o updateRegres.o updateVars.o updateWeights.o update_Alloc_GS.o update_Data_GS.o -L/Library/Frameworks/R.framework/Resources/lib/x86_64 -lRlapack -L/Library/Frameworks/R.framework/Resources/lib/x86_64 -lRblas -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ** R ** data ** inst ** preparing package for lazy loading Loading required package: splines Loading required package: lattice ** help Warning: ./man/bayesBisurvreg.Rd:556: unknown macro '\lambda' Warning: ./man/bayesHistogram.Rd:766: unknown macro '\lambda' *** installing help indices ** building package indices ... * DONE (bayesSurv)