• using R version 2.15.1 (2012-06-22)
• using platform: i386-apple-darwin9.8.0 (32-bit)
• using session charset: ASCII
• checking for file 'aroma.affymetrix/DESCRIPTION' ... OK
• this is package 'aroma.affymetrix' version '2.8.0'
• checking package namespace information ... OK
• checking package dependencies ... NOTE
  Packages suggested but not available for checking:
  'affyPLM' 'gcrma' 'dChipIO' 'oligo' 'oligoClasses' 'pdInfoBuilder'
  'AffymetrixDataTestFiles'
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package 'aroma.affymetrix' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  extractSnpFeatureSet.AffymetrixCelSet: no visible global function
  definition for 'read.celfiles'
  fit.CrlmmModel: no visible global function definition for 'getM'
  pdInfo2Cdf: no visible global function definition for 'read.celfiles'
  pdInfo2Cdf: no visible global function definition for
  'getPlatformDesign'
  pdInfo2Cdf: no visible global function definition for 'db'
  writeCdf.AffyGenePDInfo: no visible global function definition for
  'cleanPlatformName'
  writeCdf.AffyGenePDInfo: no visible global function definition for
  'geometry'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... NOTE
  Package(s) unavailable to check Rd xrefs: 'gcrma'
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... OK
• checking PDF version of manual ... OK
  NOTE: There were 3 notes.
  See
  '/Volumes/XT3/Rdev-web/QA/Simon/packages/leopard-universal/results/2.15/aroma.affymetrix.Rcheck/00check.log'
  for details.
• elapsed time (check, wall clock): 3:25